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Cluster: HRGMv2_2314_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2314_24 HRGMv2_2314_24_13 10281 10994 + GT26
TC HRGMv2_2314_24 HRGMv2_2314_24_14 10994 11869 + 2.A.115.1.5
pfam HRGMv2_2314_24 HRGMv2_2314_24_15 12046 13134 + HTH_30 | GGDEF_2
TC HRGMv2_2314_24 HRGMv2_2314_24_16 13257 14045 + 3.A.1.140.1
pfam HRGMv2_2314_24 HRGMv2_2314_24_17 14035 14943 + FtsX | FtsX_ECD
STP HRGMv2_2314_24 HRGMv2_2314_24_18 14993 16177 + Peptidase_M23
TC HRGMv2_2314_24 HRGMv2_2314_24_19 16320 17612 + 9.B.174.1.1
Gene ID: HRGMv2_2314_24_13
Type: CAZyme
Location: 10281 - 10994 (+)
Gene ID: HRGMv2_2314_24_14
Type: TC
Location: 10994 - 11869 (+)
Gene ID: HRGMv2_2314_24_15
Type: pfam
Location: 12046 - 13134 (+)
Gene ID: HRGMv2_2314_24_16
Type: TC
Location: 13257 - 14045 (+)
Gene ID: HRGMv2_2314_24_17
Type: pfam
Location: 14035 - 14943 (+)
Gene ID: HRGMv2_2314_24_18
Type: STP
Location: 14993 - 16177 (+)
Gene ID: HRGMv2_2314_24_19
Type: TC
Location: 16320 - 17612 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2314_24_16 vegetarian > vegan 1.03318 0.01135

🧭 Explore Read Mapping of CGC

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