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Cluster: HRGMv2_2314_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2314_19 HRGMv2_2314_19_35 35784 37766 + GH2
CAZyme HRGMv2_2314_19 HRGMv2_2314_19_36 37872 39392 - GH79
pfam HRGMv2_2314_19 HRGMv2_2314_19_37 40205 41269 + Aminotran_4
pfam HRGMv2_2314_19 HRGMv2_2314_19_38 41284 41706 + C_GCAxxG_C_C
TC HRGMv2_2314_19 HRGMv2_2314_19_39 41927 43021 + 3.A.1.2.3
TC HRGMv2_2314_19 HRGMv2_2314_19_40 43232 44740 + 3.A.1.2.3
TC HRGMv2_2314_19 HRGMv2_2314_19_41 44758 45747 + 3.A.1.2.3
NULL(UNKNOWN) HRGMv2_2314_19 HRGMv2_2314_19_42 45850 46161 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_2314_19 HRGMv2_2314_19_43 46213 47829 + HTH_AraC | HTH_AraC
TC HRGMv2_2314_19 HRGMv2_2314_19_44 47826 49691 + 8.A.59.2.1
STP HRGMv2_2314_19 HRGMv2_2314_19_45 49678 50646 + Peripla_BP_1
TC HRGMv2_2314_19 HRGMv2_2314_19_46 50667 51719 + 3.A.1.2.3
Gene ID: HRGMv2_2314_19_35
Type: CAZyme
Location: 35784 - 37766 (+)
Gene ID: HRGMv2_2314_19_36
Type: CAZyme
Location: 37872 - 39392 (-)
Gene ID: HRGMv2_2314_19_37
Type: pfam
Location: 40205 - 41269 (+)
Gene ID: HRGMv2_2314_19_38
Type: pfam
Location: 41284 - 41706 (+)
Gene ID: HRGMv2_2314_19_39
Type: TC
Location: 41927 - 43021 (+)
Gene ID: HRGMv2_2314_19_40
Type: TC
Location: 43232 - 44740 (+)
Gene ID: HRGMv2_2314_19_41
Type: TC
Location: 44758 - 45747 (+)
Gene ID: HRGMv2_2314_19_42
Type:
Location: 45850 - 46161 (+)
Gene ID: HRGMv2_2314_19_43
Type: TF
Location: 46213 - 47829 (+)
Gene ID: HRGMv2_2314_19_44
Type: TC
Location: 47826 - 49691 (+)
Gene ID: HRGMv2_2314_19_45
Type: STP
Location: 49678 - 50646 (+)
Gene ID: HRGMv2_2314_19_46
Type: TC
Location: 50667 - 51719 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2314_19_41 vegetarian > omnivore 1.08039 0.01047

🧭 Explore Read Mapping of CGC

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