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Cluster: HRGMv2_2314_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2314_9 HRGMv2_2314_9_5 2230 3111 + 2.A.115.1.1
TF HRGMv2_2314_9 HRGMv2_2314_9_6 3108 4013 + HTH_1
TC HRGMv2_2314_9 HRGMv2_2314_9_7 4177 5256 + 3.A.1.24.2
TC HRGMv2_2314_9 HRGMv2_2314_9_8 5246 5908 + 3.A.1.24.5
TC HRGMv2_2314_9 HRGMv2_2314_9_9 5925 6836 + 3.A.1.24.5
pfam HRGMv2_2314_9 HRGMv2_2314_9_10 7041 7697 + CxxCxxCC
STP HRGMv2_2314_9 HRGMv2_2314_9_11 7741 9708 + HATPase_c | HisKA | Response_reg
TC HRGMv2_2314_9 HRGMv2_2314_9_12 9885 10244 + 1.E.14.1.1
TC HRGMv2_2314_9 HRGMv2_2314_9_13 10241 10933 + 2.A.122.1.4
CAZyme HRGMv2_2314_9 HRGMv2_2314_9_14 11025 11774 + CBM50
Gene ID: HRGMv2_2314_9_5
Type: TC
Location: 2230 - 3111 (+)
Gene ID: HRGMv2_2314_9_6
Type: TF
Location: 3108 - 4013 (+)
Gene ID: HRGMv2_2314_9_7
Type: TC
Location: 4177 - 5256 (+)
Gene ID: HRGMv2_2314_9_8
Type: TC
Location: 5246 - 5908 (+)
Gene ID: HRGMv2_2314_9_9
Type: TC
Location: 5925 - 6836 (+)
Gene ID: HRGMv2_2314_9_10
Type: pfam
Location: 7041 - 7697 (+)
Gene ID: HRGMv2_2314_9_11
Type: STP
Location: 7741 - 9708 (+)
Gene ID: HRGMv2_2314_9_12
Type: TC
Location: 9885 - 10244 (+)
Gene ID: HRGMv2_2314_9_13
Type: TC
Location: 10241 - 10933 (+)
Gene ID: HRGMv2_2314_9_14
Type: CAZyme
Location: 11025 - 11774 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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