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Cluster: HRGMv2_2314_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2314_1 HRGMv2_2314_1_66 78374 79225 - GH23
TC HRGMv2_2314_1 HRGMv2_2314_1_67 79324 80085 + 2.A.78.1.1
TC HRGMv2_2314_1 HRGMv2_2314_1_68 80085 80423 + 2.A.78.1.1
pfam HRGMv2_2314_1 HRGMv2_2314_1_69 80461 81735 + Orn_DAP_Arg_deC | Orn_Arg_deC_N
NULL(UNKNOWN) HRGMv2_2314_1 HRGMv2_2314_1_70 81772 82518 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2314_1 HRGMv2_2314_1_71 82644 84212 + 3.A.1.3.12
TC HRGMv2_2314_1 HRGMv2_2314_1_72 84205 84945 + 3.A.1.3.25
Gene ID: HRGMv2_2314_1_66
Type: CAZyme
Location: 78374 - 79225 (-)
Gene ID: HRGMv2_2314_1_67
Type: TC
Location: 79324 - 80085 (+)
Gene ID: HRGMv2_2314_1_68
Type: TC
Location: 80085 - 80423 (+)
Gene ID: HRGMv2_2314_1_69
Type: pfam
Location: 80461 - 81735 (+)
Gene ID: HRGMv2_2314_1_70
Type:
Location: 81772 - 82518 (+)
Gene ID: HRGMv2_2314_1_71
Type: TC
Location: 82644 - 84212 (+)
Gene ID: HRGMv2_2314_1_72
Type: TC
Location: 84205 - 84945 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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