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Cluster: HRGMv2_2312_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2312_3 HRGMv2_2312_3_54 57864 59435 - 9.B.142.3.8
CAZyme HRGMv2_2312_3 HRGMv2_2312_3_55 59849 60787 + GT2
pfam HRGMv2_2312_3 HRGMv2_2312_3_56 60793 62466 + DUF6020
pfam HRGMv2_2312_3 HRGMv2_2312_3_57 62468 63022 + Acetyltransf_1 | Acetyltransf_3 | Acetyltransf_4 | Acetyltransf_8
CAZyme HRGMv2_2312_3 HRGMv2_2312_3_58 63030 63974 + GT2
NULL(UNKNOWN) HRGMv2_2312_3 HRGMv2_2312_3_59 63987 65630 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2312_3 HRGMv2_2312_3_60 65700 67439 + DUF6044
CAZyme HRGMv2_2312_3 HRGMv2_2312_3_61 67554 68651 + GT100
TC HRGMv2_2312_3 HRGMv2_2312_3_62 68669 70417 + 3.A.1.106.15
CAZyme HRGMv2_2312_3 HRGMv2_2312_3_63 70414 71466 + GT2
Gene ID: HRGMv2_2312_3_54
Type: TC
Location: 57864 - 59435 (-)
Gene ID: HRGMv2_2312_3_55
Type: CAZyme
Location: 59849 - 60787 (+)
Gene ID: HRGMv2_2312_3_56
Type: pfam
Location: 60793 - 62466 (+)
Gene ID: HRGMv2_2312_3_57
Type: pfam
Location: 62468 - 63022 (+)
Gene ID: HRGMv2_2312_3_58
Type: CAZyme
Location: 63030 - 63974 (+)
Gene ID: HRGMv2_2312_3_59
Type:
Location: 63987 - 65630 (+)
Gene ID: HRGMv2_2312_3_60
Type: pfam
Location: 65700 - 67439 (+)
Gene ID: HRGMv2_2312_3_61
Type: CAZyme
Location: 67554 - 68651 (+)
Gene ID: HRGMv2_2312_3_62
Type: TC
Location: 68669 - 70417 (+)
Gene ID: HRGMv2_2312_3_63
Type: CAZyme
Location: 70414 - 71466 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2312_3_58 vegetarian > vegan 1.05971 0.01276

🧭 Explore Read Mapping of CGC

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