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Cluster: HRGMv2_2312_CGC47

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2312_44 HRGMv2_2312_44_1 385 1842 - 9.A.11.1.1
pfam HRGMv2_2312_44 HRGMv2_2312_44_2 1961 2506 - Mntp | Mntp
CAZyme HRGMv2_2312_44 HRGMv2_2312_44_3 2690 3499 + CE4
pfam HRGMv2_2312_44 HRGMv2_2312_44_4 3537 4097 + DUF436
CAZyme HRGMv2_2312_44 HRGMv2_2312_44_5 4112 5188 - GT28
pfam HRGMv2_2312_44 HRGMv2_2312_44_6 5249 5497 - TSCPD
pfam HRGMv2_2312_44 HRGMv2_2312_44_7 5605 6213 - DUF624
CAZyme HRGMv2_2312_44 HRGMv2_2312_44_8 6210 7544 - GH28
TF HRGMv2_2312_44 HRGMv2_2312_44_9 7600 8472 - HTH_AraC | HTH_AraC
STP HRGMv2_2312_44 HRGMv2_2312_44_10 8834 10225 + SBP_bac_1
TC HRGMv2_2312_44 HRGMv2_2312_44_11 10334 11248 + 3.A.1.1.11
TC HRGMv2_2312_44 HRGMv2_2312_44_12 11284 12126 + 3.A.1.1.11
CAZyme HRGMv2_2312_44 HRGMv2_2312_44_13 12352 13917 + CBM91 | GH43_11
CAZyme HRGMv2_2312_44 HRGMv2_2312_44_14 14072 15451 + GH4
Gene ID: HRGMv2_2312_44_1
Type: TC
Location: 385 - 1842 (-)
Gene ID: HRGMv2_2312_44_2
Type: pfam
Location: 1961 - 2506 (-)
Gene ID: HRGMv2_2312_44_3
Type: CAZyme
Location: 2690 - 3499 (+)
Gene ID: HRGMv2_2312_44_4
Type: pfam
Location: 3537 - 4097 (+)
Gene ID: HRGMv2_2312_44_5
Type: CAZyme
Location: 4112 - 5188 (-)
Gene ID: HRGMv2_2312_44_6
Type: pfam
Location: 5249 - 5497 (-)
Gene ID: HRGMv2_2312_44_7
Type: pfam
Location: 5605 - 6213 (-)
Gene ID: HRGMv2_2312_44_8
Type: CAZyme
Location: 6210 - 7544 (-)
Gene ID: HRGMv2_2312_44_9
Type: TF
Location: 7600 - 8472 (-)
Gene ID: HRGMv2_2312_44_10
Type: STP
Location: 8834 - 10225 (+)
Gene ID: HRGMv2_2312_44_11
Type: TC
Location: 10334 - 11248 (+)
Gene ID: HRGMv2_2312_44_12
Type: TC
Location: 11284 - 12126 (+)
Gene ID: HRGMv2_2312_44_13
Type: CAZyme
Location: 12352 - 13917 (+)
Gene ID: HRGMv2_2312_44_14
Type: CAZyme
Location: 14072 - 15451 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2312_44_6 vegetarian > omnivore 4.10503 0.01846

🧭 Explore Read Mapping of CGC

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