dbCAN Logo

Cluster: HRGMv2_2312_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2312_26 HRGMv2_2312_26_10 9452 10318 - 3.A.1.1.26
TC HRGMv2_2312_26 HRGMv2_2312_26_11 10328 11248 - 3.A.1.1.4
pfam HRGMv2_2312_26 HRGMv2_2312_26_12 11331 12695 - SBP_bac_8
TF HRGMv2_2312_26 HRGMv2_2312_26_13 12777 13787 - LacI
CAZyme HRGMv2_2312_26 HRGMv2_2312_26_14 14255 16690 + GH94
pfam HRGMv2_2312_26 HRGMv2_2312_26_15 16901 17902 + 2-Hacid_dh | 2-Hacid_dh_C
pfam HRGMv2_2312_26 HRGMv2_2312_26_16 17924 18235 - rhaM
TC HRGMv2_2312_26 HRGMv2_2312_26_17 18347 19735 - 2.A.66.1.28
Gene ID: HRGMv2_2312_26_10
Type: TC
Location: 9452 - 10318 (-)
Gene ID: HRGMv2_2312_26_11
Type: TC
Location: 10328 - 11248 (-)
Gene ID: HRGMv2_2312_26_12
Type: pfam
Location: 11331 - 12695 (-)
Gene ID: HRGMv2_2312_26_13
Type: TF
Location: 12777 - 13787 (-)
Gene ID: HRGMv2_2312_26_14
Type: CAZyme
Location: 14255 - 16690 (+)
Gene ID: HRGMv2_2312_26_15
Type: pfam
Location: 16901 - 17902 (+)
Gene ID: HRGMv2_2312_26_16
Type: pfam
Location: 17924 - 18235 (-)
Gene ID: HRGMv2_2312_26_17
Type: TC
Location: 18347 - 19735 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2312_26_16 vegetarian > vegan 1.17970 0.01276

🧭 Explore Read Mapping of CGC

← Back to Cluster List