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Cluster: HRGMv2_2312_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2312_2 HRGMv2_2312_2_43 54348 56399 - GH42
pfam HRGMv2_2312_2 HRGMv2_2312_2_44 56417 57391 - FAD_oxidored
STP HRGMv2_2312_2 HRGMv2_2312_2_45 57407 58915 - Pyr_redox_2
TC HRGMv2_2312_2 HRGMv2_2312_2_46 58935 59771 - 3.A.1.1.11
TC HRGMv2_2312_2 HRGMv2_2312_2_47 59801 60676 - 3.A.1.1.11
TC HRGMv2_2312_2 HRGMv2_2312_2_48 60732 62117 - 3.A.1.1.11
TF HRGMv2_2312_2 HRGMv2_2312_2_49 62287 63024 + HTH_AraC | HTH_AraC
TC HRGMv2_2312_2 HRGMv2_2312_2_50 63030 64823 + 8.A.59.2.1
STP HRGMv2_2312_2 HRGMv2_2312_2_51 64820 67174 - HATPase_c | HisKA | Response_reg
STP HRGMv2_2312_2 HRGMv2_2312_2_52 67350 69023 + EAL | GGDEF
TC HRGMv2_2312_2 HRGMv2_2312_2_53 69084 70028 - 1.B.52.2.1
Gene ID: HRGMv2_2312_2_43
Type: CAZyme
Location: 54348 - 56399 (-)
Gene ID: HRGMv2_2312_2_44
Type: pfam
Location: 56417 - 57391 (-)
Gene ID: HRGMv2_2312_2_45
Type: STP
Location: 57407 - 58915 (-)
Gene ID: HRGMv2_2312_2_46
Type: TC
Location: 58935 - 59771 (-)
Gene ID: HRGMv2_2312_2_47
Type: TC
Location: 59801 - 60676 (-)
Gene ID: HRGMv2_2312_2_48
Type: TC
Location: 60732 - 62117 (-)
Gene ID: HRGMv2_2312_2_49
Type: TF
Location: 62287 - 63024 (+)
Gene ID: HRGMv2_2312_2_50
Type: TC
Location: 63030 - 64823 (+)
Gene ID: HRGMv2_2312_2_51
Type: STP
Location: 64820 - 67174 (-)
Gene ID: HRGMv2_2312_2_52
Type: STP
Location: 67350 - 69023 (+)
Gene ID: HRGMv2_2312_2_53
Type: TC
Location: 69084 - 70028 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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