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Cluster: HRGMv2_2312_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2312_20 HRGMv2_2312_20_4 2500 3243 + 3.A.1.140.1
pfam HRGMv2_2312_20 HRGMv2_2312_20_5 3233 4168 + FtsX | FtsX_ECD
STP HRGMv2_2312_20 HRGMv2_2312_20_6 4205 5452 + Peptidase_M23
TC HRGMv2_2312_20 HRGMv2_2312_20_7 5487 6785 + 9.B.174.1.1
pfam HRGMv2_2312_20 HRGMv2_2312_20_8 6918 8948 + Helicase_C | UVR | ResIII | UvrB | UvrB_inter
pfam HRGMv2_2312_20 HRGMv2_2312_20_9 9071 11941 + UvrA_DNA-bind | UvrA_inter
CAZyme HRGMv2_2312_20 HRGMv2_2312_20_10 12176 20332 + CE12 | PL11_1
TC HRGMv2_2312_20 HRGMv2_2312_20_11 20505 21494 + 1.A.33.1.5
Gene ID: HRGMv2_2312_20_4
Type: TC
Location: 2500 - 3243 (+)
Gene ID: HRGMv2_2312_20_5
Type: pfam
Location: 3233 - 4168 (+)
Gene ID: HRGMv2_2312_20_6
Type: STP
Location: 4205 - 5452 (+)
Gene ID: HRGMv2_2312_20_7
Type: TC
Location: 5487 - 6785 (+)
Gene ID: HRGMv2_2312_20_8
Type: pfam
Location: 6918 - 8948 (+)
Gene ID: HRGMv2_2312_20_9
Type: pfam
Location: 9071 - 11941 (+)
Gene ID: HRGMv2_2312_20_10
Type: CAZyme
Location: 12176 - 20332 (+)
Gene ID: HRGMv2_2312_20_11
Type: TC
Location: 20505 - 21494 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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