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Cluster: HRGMv2_2312_CGC36

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2312_19 HRGMv2_2312_19_14 12933 14339 + GH3
TF HRGMv2_2312_19 HRGMv2_2312_19_15 14394 15944 + TrmB
TC HRGMv2_2312_19 HRGMv2_2312_19_16 16166 17089 + 3.A.1.1.10
TC HRGMv2_2312_19 HRGMv2_2312_19_17 17106 18032 + 3.A.1.1.29
STP HRGMv2_2312_19 HRGMv2_2312_19_18 18133 19707 + SBP_bac_1
TF HRGMv2_2312_19 HRGMv2_2312_19_19 19768 20760 + LacI
CAZyme HRGMv2_2312_19 HRGMv2_2312_19_20 20797 22326 + GH53
CAZyme HRGMv2_2312_19 HRGMv2_2312_19_21 22412 24469 + GH35
CAZyme HRGMv2_2312_19 HRGMv2_2312_19_22 24565 28179 + GH115
TC HRGMv2_2312_19 HRGMv2_2312_19_23 28505 29524 - 9.B.97.4.1
TC HRGMv2_2312_19 HRGMv2_2312_19_24 29707 31311 + 9.B.34.1.4
TC HRGMv2_2312_19 HRGMv2_2312_19_25 31301 33061 + 3.A.1.106.2
Gene ID: HRGMv2_2312_19_14
Type: CAZyme
Location: 12933 - 14339 (+)
Gene ID: HRGMv2_2312_19_15
Type: TF
Location: 14394 - 15944 (+)
Gene ID: HRGMv2_2312_19_16
Type: TC
Location: 16166 - 17089 (+)
Gene ID: HRGMv2_2312_19_17
Type: TC
Location: 17106 - 18032 (+)
Gene ID: HRGMv2_2312_19_18
Type: STP
Location: 18133 - 19707 (+)
Gene ID: HRGMv2_2312_19_19
Type: TF
Location: 19768 - 20760 (+)
Gene ID: HRGMv2_2312_19_20
Type: CAZyme
Location: 20797 - 22326 (+)
Gene ID: HRGMv2_2312_19_21
Type: CAZyme
Location: 22412 - 24469 (+)
Gene ID: HRGMv2_2312_19_22
Type: CAZyme
Location: 24565 - 28179 (+)
Gene ID: HRGMv2_2312_19_23
Type: TC
Location: 28505 - 29524 (-)
Gene ID: HRGMv2_2312_19_24
Type: TC
Location: 29707 - 31311 (+)
Gene ID: HRGMv2_2312_19_25
Type: TC
Location: 31301 - 33061 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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