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Cluster: HRGMv2_2312_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2312_15 HRGMv2_2312_15_17 18037 18510 + 9.A.11.1.1
NULL(UNKNOWN) HRGMv2_2312_15 HRGMv2_2312_15_18 18666 19652 + NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_2312_15 HRGMv2_2312_15_19 19752 20000 + GGDEF
CAZyme HRGMv2_2312_15 HRGMv2_2312_15_20 20002 21066 + CE8
pfam HRGMv2_2312_15 HRGMv2_2312_15_21 21063 23075 + UvrD-helicase | AAA_19 | UvrD_C | UvrD_C_2
TF HRGMv2_2312_15 HRGMv2_2312_15_22 23149 23517 + GntR
TC HRGMv2_2312_15 HRGMv2_2312_15_23 23556 24458 + 3.A.1.132.6
Gene ID: HRGMv2_2312_15_17
Type: TC
Location: 18037 - 18510 (+)
Gene ID: HRGMv2_2312_15_18
Type:
Location: 18666 - 19652 (+)
Gene ID: HRGMv2_2312_15_19
Type: STP
Location: 19752 - 20000 (+)
Gene ID: HRGMv2_2312_15_20
Type: CAZyme
Location: 20002 - 21066 (+)
Gene ID: HRGMv2_2312_15_21
Type: pfam
Location: 21063 - 23075 (+)
Gene ID: HRGMv2_2312_15_22
Type: TF
Location: 23149 - 23517 (+)
Gene ID: HRGMv2_2312_15_23
Type: TC
Location: 23556 - 24458 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2312_15_19 vegetarian > vegan 2.67080 0.01276

🧭 Explore Read Mapping of CGC

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