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Cluster: HRGMv2_2312_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2312_12 HRGMv2_2312_12_11 11469 12818 - 3.A.1.121.4
CAZyme HRGMv2_2312_12 HRGMv2_2312_12_12 12878 14701 - PL33_1
TF HRGMv2_2312_12 HRGMv2_2312_12_13 14707 16317 - HTH_AraC | HTH_AraC
TC HRGMv2_2312_12 HRGMv2_2312_12_14 16370 18160 - 8.A.59.2.1
STP HRGMv2_2312_12 HRGMv2_2312_12_15 18799 20175 + SBP_bac_1
TC HRGMv2_2312_12 HRGMv2_2312_12_16 20240 21304 + 3.A.1.1.23
pfam HRGMv2_2312_12 HRGMv2_2312_12_17 21330 22118 + DUF7402
TC HRGMv2_2312_12 HRGMv2_2312_12_18 22141 22980 + 3.A.1.1.11
CAZyme HRGMv2_2312_12 HRGMv2_2312_12_19 23022 24191 + GH88
TC HRGMv2_2312_12 HRGMv2_2312_12_20 24408 26117 + 1.B.52.2.1
Gene ID: HRGMv2_2312_12_11
Type: TC
Location: 11469 - 12818 (-)
Gene ID: HRGMv2_2312_12_12
Type: CAZyme
Location: 12878 - 14701 (-)
Gene ID: HRGMv2_2312_12_13
Type: TF
Location: 14707 - 16317 (-)
Gene ID: HRGMv2_2312_12_14
Type: TC
Location: 16370 - 18160 (-)
Gene ID: HRGMv2_2312_12_15
Type: STP
Location: 18799 - 20175 (+)
Gene ID: HRGMv2_2312_12_16
Type: TC
Location: 20240 - 21304 (+)
Gene ID: HRGMv2_2312_12_17
Type: pfam
Location: 21330 - 22118 (+)
Gene ID: HRGMv2_2312_12_18
Type: TC
Location: 22141 - 22980 (+)
Gene ID: HRGMv2_2312_12_19
Type: CAZyme
Location: 23022 - 24191 (+)
Gene ID: HRGMv2_2312_12_20
Type: TC
Location: 24408 - 26117 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2312_12_16 vegetarian > omnivore 1.29543 0.01846

🧭 Explore Read Mapping of CGC

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