Cluster: HRGMv2_2312_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2312
- CGC Family ID: CGCFAM_02896
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2312_4 | HRGMv2_2312_4_24 | 28470 | 29045 | + | 2.A.107.1.2 |
| CAZyme | HRGMv2_2312_4 | HRGMv2_2312_4_25 | 29038 | 30189 | - | GH105 |
| pfam | HRGMv2_2312_4 | HRGMv2_2312_4_26 | 30285 | 31265 | - | TraX | TraX |
| TF | HRGMv2_2312_4 | HRGMv2_2312_4_27 | 31464 | 32228 | - | Trans_reg_C |
| TC | HRGMv2_2312_4 | HRGMv2_2312_4_28 | 32369 | 33604 | - | 2.A.86.1.9 |
Gene ID: HRGMv2_2312_4_24
Type: TC
Location: 28470 - 29045 (+)
Type: TC
Location: 28470 - 29045 (+)
Gene ID: HRGMv2_2312_4_25
Type: CAZyme
Location: 29038 - 30189 (-)
Type: CAZyme
Location: 29038 - 30189 (-)
Gene ID: HRGMv2_2312_4_26
Type: pfam
Location: 30285 - 31265 (-)
Type: pfam
Location: 30285 - 31265 (-)
Gene ID: HRGMv2_2312_4_27
Type: TF
Location: 31464 - 32228 (-)
Type: TF
Location: 31464 - 32228 (-)
Gene ID: HRGMv2_2312_4_28
Type: TC
Location: 32369 - 33604 (-)
Type: TC
Location: 32369 - 33604 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor sp900755865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.