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Cluster: HRGMv2_2312_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2312_4 HRGMv2_2312_4_10 10588 12771 - GH36
TC HRGMv2_2312_4 HRGMv2_2312_4_11 12898 15492 - 3.A.9.1.2
pfam HRGMv2_2312_4 HRGMv2_2312_4_12 15669 16175 - Metallophos
NULL(UNKNOWN) HRGMv2_2312_4 HRGMv2_2312_4_13 16449 17102 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2312_4 HRGMv2_2312_4_14 17234 20125 - 3.A.3.5.15
pfam HRGMv2_2312_4 HRGMv2_2312_4_15 20164 20487 - Trns_repr_metal
STP HRGMv2_2312_4 HRGMv2_2312_4_16 20994 22298 - Aminotran_1_2
TC HRGMv2_2312_4 HRGMv2_2312_4_17 22370 23839 - 1.B.52.2.1
CAZyme HRGMv2_2312_4 HRGMv2_2312_4_18 23992 25545 - CBM91 | GH43_10
Gene ID: HRGMv2_2312_4_10
Type: CAZyme
Location: 10588 - 12771 (-)
Gene ID: HRGMv2_2312_4_11
Type: TC
Location: 12898 - 15492 (-)
Gene ID: HRGMv2_2312_4_12
Type: pfam
Location: 15669 - 16175 (-)
Gene ID: HRGMv2_2312_4_13
Type:
Location: 16449 - 17102 (+)
Gene ID: HRGMv2_2312_4_14
Type: TC
Location: 17234 - 20125 (-)
Gene ID: HRGMv2_2312_4_15
Type: pfam
Location: 20164 - 20487 (-)
Gene ID: HRGMv2_2312_4_16
Type: STP
Location: 20994 - 22298 (-)
Gene ID: HRGMv2_2312_4_17
Type: TC
Location: 22370 - 23839 (-)
Gene ID: HRGMv2_2312_4_18
Type: CAZyme
Location: 23992 - 25545 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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