dbCAN Logo

Cluster: HRGMv2_2312_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2312_3 HRGMv2_2312_3_79 88276 90540 + GH25
pfam HRGMv2_2312_3 HRGMv2_2312_3_80 90656 91738 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd
pfam HRGMv2_2312_3 HRGMv2_2312_3_81 91820 92689 + NTP_transferase | NTP_transf_3
CAZyme HRGMv2_2312_3 HRGMv2_2312_3_82 92679 93968 + GH25
pfam HRGMv2_2312_3 HRGMv2_2312_3_83 94032 94583 + dTDP_sugar_isom
TC HRGMv2_2312_3 HRGMv2_2312_3_84 94601 95584 + 3.A.1.104.1
TC HRGMv2_2312_3 HRGMv2_2312_3_85 95635 96891 + 3.A.1.103.6
pfam HRGMv2_2312_3 HRGMv2_2312_3_86 96961 99012 + PCMT | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25
CAZyme HRGMv2_2312_3 HRGMv2_2312_3_87 99026 101020 + GT2
CAZyme HRGMv2_2312_3 HRGMv2_2312_3_88 101060 103132 + GT2
pfam HRGMv2_2312_3 HRGMv2_2312_3_89 103186 105231 + DUF6020
pfam HRGMv2_2312_3 HRGMv2_2312_3_90 105252 107009 + PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
CAZyme HRGMv2_2312_3 HRGMv2_2312_3_91 107034 108440 + GT2
NULL(UNKNOWN) HRGMv2_2312_3 HRGMv2_2312_3_92 108400 108519 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2312_3 HRGMv2_2312_3_93 108507 109484 + GT2
Gene ID: HRGMv2_2312_3_79
Type: CAZyme
Location: 88276 - 90540 (+)
Gene ID: HRGMv2_2312_3_80
Type: pfam
Location: 90656 - 91738 (+)
Gene ID: HRGMv2_2312_3_81
Type: pfam
Location: 91820 - 92689 (+)
Gene ID: HRGMv2_2312_3_82
Type: CAZyme
Location: 92679 - 93968 (+)
Gene ID: HRGMv2_2312_3_83
Type: pfam
Location: 94032 - 94583 (+)
Gene ID: HRGMv2_2312_3_84
Type: TC
Location: 94601 - 95584 (+)
Gene ID: HRGMv2_2312_3_85
Type: TC
Location: 95635 - 96891 (+)
Gene ID: HRGMv2_2312_3_86
Type: pfam
Location: 96961 - 99012 (+)
Gene ID: HRGMv2_2312_3_87
Type: CAZyme
Location: 99026 - 101020 (+)
Gene ID: HRGMv2_2312_3_88
Type: CAZyme
Location: 101060 - 103132 (+)
Gene ID: HRGMv2_2312_3_89
Type: pfam
Location: 103186 - 105231 (+)
Gene ID: HRGMv2_2312_3_90
Type: pfam
Location: 105252 - 107009 (+)
Gene ID: HRGMv2_2312_3_91
Type: CAZyme
Location: 107034 - 108440 (+)
Gene ID: HRGMv2_2312_3_92
Type:
Location: 108400 - 108519 (+)
Gene ID: HRGMv2_2312_3_93
Type: CAZyme
Location: 108507 - 109484 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2312_3_83 vegetarian > vegan 1.78534 0.01276

🧭 Explore Read Mapping of CGC

← Back to Cluster List