Cluster: HRGMv2_2312_CGC1
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2312
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2312_1 | HRGMv2_2312_1_106 | 109693 | 111135 | - | 2.A.66.1.33 |
| TF | HRGMv2_2312_1 | HRGMv2_2312_1_107 | 111428 | 111754 | + | HTH_3 |
| TC | HRGMv2_2312_1 | HRGMv2_2312_1_108 | 111884 | 113260 | + | 2.A.66.1.13 |
| NULL(UNKNOWN) | HRGMv2_2312_1 | HRGMv2_2312_1_109 | 113365 | 113706 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2312_1 | HRGMv2_2312_1_110 | 113728 | 115647 | - | GH133 |
| CAZyme | HRGMv2_2312_1 | HRGMv2_2312_1_111 | 115647 | 117740 | - | GH13_14 |
| TC | HRGMv2_2312_1 | HRGMv2_2312_1_112 | 117769 | 118620 | - | 3.A.1.1.27 |
| TC | HRGMv2_2312_1 | HRGMv2_2312_1_113 | 118620 | 120020 | - | 3.A.1.1.27 |
| TC | HRGMv2_2312_1 | HRGMv2_2312_1_114 | 120093 | 121328 | - | 3.A.1.1.27 |
| TF | HRGMv2_2312_1 | HRGMv2_2312_1_115 | 121701 | 122726 | + | LacI |
| CAZyme | HRGMv2_2312_1 | HRGMv2_2312_1_116 | 122676 | 124400 | - | GH13_31 |
| NULL(UNKNOWN) | HRGMv2_2312_1 | HRGMv2_2312_1_117 | 124536 | 124793 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_2312_1 | HRGMv2_2312_1_118 | 124813 | 125253 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2312_1 | HRGMv2_2312_1_119 | 125586 | 126959 | + | GH28 |
| pfam | HRGMv2_2312_1 | HRGMv2_2312_1_120 | 127071 | 127820 | + | FRG |
| TC | HRGMv2_2312_1 | HRGMv2_2312_1_121 | 127873 | 128991 | + | 3.A.1.1.38 |
| TC | HRGMv2_2312_1 | HRGMv2_2312_1_122 | 128994 | 129887 | + | 3.A.1.1.34 |
| TC | HRGMv2_2312_1 | HRGMv2_2312_1_123 | 129906 | 130781 | + | 3.A.1.1.20 |
Gene ID: HRGMv2_2312_1_106
Type: TC
Location: 109693 - 111135 (-)
Type: TC
Location: 109693 - 111135 (-)
Gene ID: HRGMv2_2312_1_107
Type: TF
Location: 111428 - 111754 (+)
Type: TF
Location: 111428 - 111754 (+)
Gene ID: HRGMv2_2312_1_108
Type: TC
Location: 111884 - 113260 (+)
Type: TC
Location: 111884 - 113260 (+)
Gene ID: HRGMv2_2312_1_109
Type:
Location: 113365 - 113706 (-)
Type:
Location: 113365 - 113706 (-)
Gene ID: HRGMv2_2312_1_110
Type: CAZyme
Location: 113728 - 115647 (-)
Type: CAZyme
Location: 113728 - 115647 (-)
Gene ID: HRGMv2_2312_1_111
Type: CAZyme
Location: 115647 - 117740 (-)
Type: CAZyme
Location: 115647 - 117740 (-)
Gene ID: HRGMv2_2312_1_112
Type: TC
Location: 117769 - 118620 (-)
Type: TC
Location: 117769 - 118620 (-)
Gene ID: HRGMv2_2312_1_113
Type: TC
Location: 118620 - 120020 (-)
Type: TC
Location: 118620 - 120020 (-)
Gene ID: HRGMv2_2312_1_114
Type: TC
Location: 120093 - 121328 (-)
Type: TC
Location: 120093 - 121328 (-)
Gene ID: HRGMv2_2312_1_115
Type: TF
Location: 121701 - 122726 (+)
Type: TF
Location: 121701 - 122726 (+)
Gene ID: HRGMv2_2312_1_116
Type: CAZyme
Location: 122676 - 124400 (-)
Type: CAZyme
Location: 122676 - 124400 (-)
Gene ID: HRGMv2_2312_1_117
Type:
Location: 124536 - 124793 (-)
Type:
Location: 124536 - 124793 (-)
Gene ID: HRGMv2_2312_1_118
Type:
Location: 124813 - 125253 (-)
Type:
Location: 124813 - 125253 (-)
Gene ID: HRGMv2_2312_1_119
Type: CAZyme
Location: 125586 - 126959 (+)
Type: CAZyme
Location: 125586 - 126959 (+)
Gene ID: HRGMv2_2312_1_120
Type: pfam
Location: 127071 - 127820 (+)
Type: pfam
Location: 127071 - 127820 (+)
Gene ID: HRGMv2_2312_1_121
Type: TC
Location: 127873 - 128991 (+)
Type: TC
Location: 127873 - 128991 (+)
Gene ID: HRGMv2_2312_1_122
Type: TC
Location: 128994 - 129887 (+)
Type: TC
Location: 128994 - 129887 (+)
Gene ID: HRGMv2_2312_1_123
Type: TC
Location: 129906 - 130781 (+)
Type: TC
Location: 129906 - 130781 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor sp900755865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.