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Cluster: HRGMv2_2308_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2308_8 HRGMv2_2308_8_21 35120 41212 - CBM51 | CBM51 | GH2
CAZyme HRGMv2_2308_8 HRGMv2_2308_8_22 41377 46953 - CBM51 | GH110
TC HRGMv2_2308_8 HRGMv2_2308_8_23 47055 47456 - 3.A.2.1.5
TC HRGMv2_2308_8 HRGMv2_2308_8_24 47469 48860 - 3.A.2.1.5
TC HRGMv2_2308_8 HRGMv2_2308_8_25 48900 49760 - 3.A.2.1.5
TC HRGMv2_2308_8 HRGMv2_2308_8_26 49777 51279 - 3.A.2.1.5
TC HRGMv2_2308_8 HRGMv2_2308_8_27 51307 51852 - 3.A.2.1.2
pfam HRGMv2_2308_8 HRGMv2_2308_8_28 51840 52355 - ATP-synt_B
TC HRGMv2_2308_8 HRGMv2_2308_8_29 52405 52671 - 3.A.2.1.5
TC HRGMv2_2308_8 HRGMv2_2308_8_30 52710 53429 - 3.A.2.1.5
Gene ID: HRGMv2_2308_8_21
Type: CAZyme
Location: 35120 - 41212 (-)
Gene ID: HRGMv2_2308_8_22
Type: CAZyme
Location: 41377 - 46953 (-)
Gene ID: HRGMv2_2308_8_23
Type: TC
Location: 47055 - 47456 (-)
Gene ID: HRGMv2_2308_8_24
Type: TC
Location: 47469 - 48860 (-)
Gene ID: HRGMv2_2308_8_25
Type: TC
Location: 48900 - 49760 (-)
Gene ID: HRGMv2_2308_8_26
Type: TC
Location: 49777 - 51279 (-)
Gene ID: HRGMv2_2308_8_27
Type: TC
Location: 51307 - 51852 (-)
Gene ID: HRGMv2_2308_8_28
Type: pfam
Location: 51840 - 52355 (-)
Gene ID: HRGMv2_2308_8_29
Type: TC
Location: 52405 - 52671 (-)
Gene ID: HRGMv2_2308_8_30
Type: TC
Location: 52710 - 53429 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Faecalimonas
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2308_8_29 vegetarian > vegan 1.51774 0.00454

🧭 Explore Read Mapping of CGC

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