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Cluster: HRGMv2_2308_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2308_30 HRGMv2_2308_30_2 474 2126 + 3.A.1.5.2
TC HRGMv2_2308_30 HRGMv2_2308_30_3 2377 3330 + 3.A.1.5.2
TC HRGMv2_2308_30 HRGMv2_2308_30_4 3335 4336 + 3.A.1.5.2
TC HRGMv2_2308_30 HRGMv2_2308_30_5 4343 5341 + 3.A.1.5.2
TC HRGMv2_2308_30 HRGMv2_2308_30_6 5344 6294 + 3.A.1.5.20
CAZyme HRGMv2_2308_30 HRGMv2_2308_30_7 6506 12574 + CBM51 | GH2 | GH2
pfam HRGMv2_2308_30 HRGMv2_2308_30_8 12854 16684 + RNA_pol_Rpb2_6 | RNA_pol_Rpb2_7 | RNA_pol_Rpb2_2 | RNA_pol_Rpb2_2 | RNA_pol_Rpb2_1 | RNA_pol_Rpb2_3 | RNA_pol_Rpb2_45
pfam HRGMv2_2308_30 HRGMv2_2308_30_9 16699 20343 + RNA_pol_Rpb1_2 | RNA_pol_Rpb1_2 | RNA_pol_Rpb1_3 | RNA_pol_Rpb1_1 | RNA_pol_Rpb1_5 | RNA_pol_Rpb1_4
TC HRGMv2_2308_30 HRGMv2_2308_30_10 20398 21738 + 2.A.40.2.1
TC HRGMv2_2308_30 HRGMv2_2308_30_11 21757 22437 + 9.B.143.2.3
Gene ID: HRGMv2_2308_30_2
Type: TC
Location: 474 - 2126 (+)
Gene ID: HRGMv2_2308_30_3
Type: TC
Location: 2377 - 3330 (+)
Gene ID: HRGMv2_2308_30_4
Type: TC
Location: 3335 - 4336 (+)
Gene ID: HRGMv2_2308_30_5
Type: TC
Location: 4343 - 5341 (+)
Gene ID: HRGMv2_2308_30_6
Type: TC
Location: 5344 - 6294 (+)
Gene ID: HRGMv2_2308_30_7
Type: CAZyme
Location: 6506 - 12574 (+)
Gene ID: HRGMv2_2308_30_8
Type: pfam
Location: 12854 - 16684 (+)
Gene ID: HRGMv2_2308_30_9
Type: pfam
Location: 16699 - 20343 (+)
Gene ID: HRGMv2_2308_30_10
Type: TC
Location: 20398 - 21738 (+)
Gene ID: HRGMv2_2308_30_11
Type: TC
Location: 21757 - 22437 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Faecalimonas
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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