Cluster: HRGMv2_2308_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2308
- CGC Family ID: CGCFAM_03010
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2308_29 | HRGMv2_2308_29_5 | 5073 | 7031 | + | CBM32 | GH30_1 |
| TF | HRGMv2_2308_29 | HRGMv2_2308_29_6 | 7077 | 7946 | - | HTH_AraC | HTH_AraC |
| NULL(UNKNOWN) | HRGMv2_2308_29 | HRGMv2_2308_29_7 | 8143 | 8955 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2308_29 | HRGMv2_2308_29_8 | 9016 | 12021 | + | GH136 |
| TC | HRGMv2_2308_29 | HRGMv2_2308_29_9 | 12151 | 13398 | + | 5.A.1.2.7 |
| pfam | HRGMv2_2308_29 | HRGMv2_2308_29_10 | 13463 | 14251 | + | Zn_dep_PLPC |
| TC | HRGMv2_2308_29 | HRGMv2_2308_29_11 | 14437 | 15813 | + | 2.A.25.1.5 |
Gene ID: HRGMv2_2308_29_5
Type: CAZyme
Location: 5073 - 7031 (+)
Type: CAZyme
Location: 5073 - 7031 (+)
Gene ID: HRGMv2_2308_29_6
Type: TF
Location: 7077 - 7946 (-)
Type: TF
Location: 7077 - 7946 (-)
Gene ID: HRGMv2_2308_29_7
Type:
Location: 8143 - 8955 (+)
Type:
Location: 8143 - 8955 (+)
Gene ID: HRGMv2_2308_29_8
Type: CAZyme
Location: 9016 - 12021 (+)
Type: CAZyme
Location: 9016 - 12021 (+)
Gene ID: HRGMv2_2308_29_9
Type: TC
Location: 12151 - 13398 (+)
Type: TC
Location: 12151 - 13398 (+)
Gene ID: HRGMv2_2308_29_10
Type: pfam
Location: 13463 - 14251 (+)
Type: pfam
Location: 13463 - 14251 (+)
Gene ID: HRGMv2_2308_29_11
Type: TC
Location: 14437 - 15813 (+)
Type: TC
Location: 14437 - 15813 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Faecalimonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.