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Cluster: HRGMv2_2305_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2305_13 HRGMv2_2305_13_31 33055 33750 + 1.C.82.1.1
pfam HRGMv2_2305_13 HRGMv2_2305_13_32 33852 34811 + Cation_efflux
CAZyme HRGMv2_2305_13 HRGMv2_2305_13_33 34902 37049 - GH3
CAZyme HRGMv2_2305_13 HRGMv2_2305_13_34 37091 40393 - GH94
TC HRGMv2_2305_13 HRGMv2_2305_13_35 40763 41698 + 3.A.1.1.10
TC HRGMv2_2305_13 HRGMv2_2305_13_36 41717 42628 + 3.A.1.1.29
STP HRGMv2_2305_13 HRGMv2_2305_13_37 42699 44258 + SBP_bac_1
TF HRGMv2_2305_13 HRGMv2_2305_13_38 44412 45437 + LacI
CAZyme HRGMv2_2305_13 HRGMv2_2305_13_39 45478 47871 + GH35
Gene ID: HRGMv2_2305_13_31
Type: TC
Location: 33055 - 33750 (+)
Gene ID: HRGMv2_2305_13_32
Type: pfam
Location: 33852 - 34811 (+)
Gene ID: HRGMv2_2305_13_33
Type: CAZyme
Location: 34902 - 37049 (-)
Gene ID: HRGMv2_2305_13_34
Type: CAZyme
Location: 37091 - 40393 (-)
Gene ID: HRGMv2_2305_13_35
Type: TC
Location: 40763 - 41698 (+)
Gene ID: HRGMv2_2305_13_36
Type: TC
Location: 41717 - 42628 (+)
Gene ID: HRGMv2_2305_13_37
Type: STP
Location: 42699 - 44258 (+)
Gene ID: HRGMv2_2305_13_38
Type: TF
Location: 44412 - 45437 (+)
Gene ID: HRGMv2_2305_13_39
Type: CAZyme
Location: 45478 - 47871 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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