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Cluster: HRGMv2_2305_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2305_53 HRGMv2_2305_53_2 1293 1958 + CE4
STP HRGMv2_2305_53 HRGMv2_2305_53_3 1984 3315 + AAA
TC HRGMv2_2305_53 HRGMv2_2305_53_4 3318 4688 + 2.A.66.1.32
STP HRGMv2_2305_53 HRGMv2_2305_53_5 4633 5178 - SKI
TF HRGMv2_2305_53 HRGMv2_2305_53_6 5398 5859 + MarR
TC HRGMv2_2305_53 HRGMv2_2305_53_7 5866 8034 + 3.A.1.135.6
TC HRGMv2_2305_53 HRGMv2_2305_53_8 8027 9862 + 3.A.1.135.6
pfam HRGMv2_2305_53 HRGMv2_2305_53_9 9996 10532 + RibD_C
TC HRGMv2_2305_53 HRGMv2_2305_53_10 10539 10952 + 2.A.7.2.1
Gene ID: HRGMv2_2305_53_2
Type: CAZyme
Location: 1293 - 1958 (+)
Gene ID: HRGMv2_2305_53_3
Type: STP
Location: 1984 - 3315 (+)
Gene ID: HRGMv2_2305_53_4
Type: TC
Location: 3318 - 4688 (+)
Gene ID: HRGMv2_2305_53_5
Type: STP
Location: 4633 - 5178 (-)
Gene ID: HRGMv2_2305_53_6
Type: TF
Location: 5398 - 5859 (+)
Gene ID: HRGMv2_2305_53_7
Type: TC
Location: 5866 - 8034 (+)
Gene ID: HRGMv2_2305_53_8
Type: TC
Location: 8027 - 9862 (+)
Gene ID: HRGMv2_2305_53_9
Type: pfam
Location: 9996 - 10532 (+)
Gene ID: HRGMv2_2305_53_10
Type: TC
Location: 10539 - 10952 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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