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Cluster: HRGMv2_2305_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2305_40 HRGMv2_2305_40_8 7834 9639 + 3.A.1.106.14
TC HRGMv2_2305_40 HRGMv2_2305_40_9 9643 11481 + 3.A.1.106.3
pfam HRGMv2_2305_40 HRGMv2_2305_40_10 11499 12146 + DeoC
TC HRGMv2_2305_40 HRGMv2_2305_40_11 12194 12751 + 4.F.1.1.8
pfam HRGMv2_2305_40 HRGMv2_2305_40_12 12745 13365 + G3P_acyltransf
CAZyme HRGMv2_2305_40 HRGMv2_2305_40_13 13369 14517 + GT28
CAZyme HRGMv2_2305_40 HRGMv2_2305_40_14 14608 16275 + GH13_31
TC HRGMv2_2305_40 HRGMv2_2305_40_15 16374 17339 - 2.A.19.5.2
TC HRGMv2_2305_40 HRGMv2_2305_40_16 17516 19312 + 3.A.1.120.6
Gene ID: HRGMv2_2305_40_8
Type: TC
Location: 7834 - 9639 (+)
Gene ID: HRGMv2_2305_40_9
Type: TC
Location: 9643 - 11481 (+)
Gene ID: HRGMv2_2305_40_10
Type: pfam
Location: 11499 - 12146 (+)
Gene ID: HRGMv2_2305_40_11
Type: TC
Location: 12194 - 12751 (+)
Gene ID: HRGMv2_2305_40_12
Type: pfam
Location: 12745 - 13365 (+)
Gene ID: HRGMv2_2305_40_13
Type: CAZyme
Location: 13369 - 14517 (+)
Gene ID: HRGMv2_2305_40_14
Type: CAZyme
Location: 14608 - 16275 (+)
Gene ID: HRGMv2_2305_40_15
Type: TC
Location: 16374 - 17339 (-)
Gene ID: HRGMv2_2305_40_16
Type: TC
Location: 17516 - 19312 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2305_40_14 vegan > omnivore 1.61030 0.02320

🧭 Explore Read Mapping of CGC

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