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Cluster: HRGMv2_2305_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2305_29 HRGMv2_2305_29_1 3 404 + 3.A.1.128.6
TC HRGMv2_2305_29 HRGMv2_2305_29_2 394 1575 + 3.A.1.115.1
TF HRGMv2_2305_29 HRGMv2_2305_29_3 1702 3972 + HTH_AraC
STP HRGMv2_2305_29 HRGMv2_2305_29_4 4170 5894 + SBP_bac_1
TC HRGMv2_2305_29 HRGMv2_2305_29_5 5975 6922 + 3.A.1.1.10
TC HRGMv2_2305_29 HRGMv2_2305_29_6 6936 7823 + 3.A.1.1.10
CAZyme HRGMv2_2305_29 HRGMv2_2305_29_7 7835 9928 + GH65
CAZyme HRGMv2_2305_29 HRGMv2_2305_29_8 9992 11134 + GH105
Gene ID: HRGMv2_2305_29_1
Type: TC
Location: 3 - 404 (+)
Gene ID: HRGMv2_2305_29_2
Type: TC
Location: 394 - 1575 (+)
Gene ID: HRGMv2_2305_29_3
Type: TF
Location: 1702 - 3972 (+)
Gene ID: HRGMv2_2305_29_4
Type: STP
Location: 4170 - 5894 (+)
Gene ID: HRGMv2_2305_29_5
Type: TC
Location: 5975 - 6922 (+)
Gene ID: HRGMv2_2305_29_6
Type: TC
Location: 6936 - 7823 (+)
Gene ID: HRGMv2_2305_29_7
Type: CAZyme
Location: 7835 - 9928 (+)
Gene ID: HRGMv2_2305_29_8
Type: CAZyme
Location: 9992 - 11134 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2305_29_1 vegetarian > vegan 1.40368 0.00560
HRGMv2_2305_29_2 vegetarian > vegan 1.19989 0.00560

🧭 Explore Read Mapping of CGC

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