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Cluster: HRGMv2_2305_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2305_14 HRGMv2_2305_14_41 39958 40620 + 9.B.143.2.3
TF HRGMv2_2305_14 HRGMv2_2305_14_42 40634 41554 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_2305_14 HRGMv2_2305_14_43 41658 43328 + GH13_31
STP HRGMv2_2305_14 HRGMv2_2305_14_44 43461 43748 + FeoA
TC HRGMv2_2305_14 HRGMv2_2305_14_45 43745 45634 + 9.A.8.1.5
NULL(UNKNOWN) HRGMv2_2305_14 HRGMv2_2305_14_46 45706 46365 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2305_14 HRGMv2_2305_14_47 46365 47615 - AAA_15 | AAA_21
TC HRGMv2_2305_14 HRGMv2_2305_14_48 47765 48529 - 1.A.16.3.3
Gene ID: HRGMv2_2305_14_41
Type: TC
Location: 39958 - 40620 (+)
Gene ID: HRGMv2_2305_14_42
Type: TF
Location: 40634 - 41554 (+)
Gene ID: HRGMv2_2305_14_43
Type: CAZyme
Location: 41658 - 43328 (+)
Gene ID: HRGMv2_2305_14_44
Type: STP
Location: 43461 - 43748 (+)
Gene ID: HRGMv2_2305_14_45
Type: TC
Location: 43745 - 45634 (+)
Gene ID: HRGMv2_2305_14_46
Type:
Location: 45706 - 46365 (-)
Gene ID: HRGMv2_2305_14_47
Type: pfam
Location: 46365 - 47615 (-)
Gene ID: HRGMv2_2305_14_48
Type: TC
Location: 47765 - 48529 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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