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Cluster: HRGMv2_2302_CGC78

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2302_29 HRGMv2_2302_29_27 39256 40176 + 3.A.1.1.29
TC HRGMv2_2302_29 HRGMv2_2302_29_28 40188 41075 + 3.A.1.1.10
STP HRGMv2_2302_29 HRGMv2_2302_29_29 41134 42681 + SBP_bac_1
pfam HRGMv2_2302_29 HRGMv2_2302_29_30 42800 46114 + Hepar_II_III_C
CAZyme HRGMv2_2302_29 HRGMv2_2302_29_31 46316 47419 + CE19
CAZyme HRGMv2_2302_29 HRGMv2_2302_29_32 47461 48612 + GH88
TF HRGMv2_2302_29 HRGMv2_2302_29_33 48622 49413 - HTH_AraC
CAZyme HRGMv2_2302_29 HRGMv2_2302_29_34 49505 51151 + CBM91 | GH43_11
CAZyme HRGMv2_2302_29 HRGMv2_2302_29_35 51196 52551 + GH28
Gene ID: HRGMv2_2302_29_27
Type: TC
Location: 39256 - 40176 (+)
Gene ID: HRGMv2_2302_29_28
Type: TC
Location: 40188 - 41075 (+)
Gene ID: HRGMv2_2302_29_29
Type: STP
Location: 41134 - 42681 (+)
Gene ID: HRGMv2_2302_29_30
Type: pfam
Location: 42800 - 46114 (+)
Gene ID: HRGMv2_2302_29_31
Type: CAZyme
Location: 46316 - 47419 (+)
Gene ID: HRGMv2_2302_29_32
Type: CAZyme
Location: 47461 - 48612 (+)
Gene ID: HRGMv2_2302_29_33
Type: TF
Location: 48622 - 49413 (-)
Gene ID: HRGMv2_2302_29_34
Type: CAZyme
Location: 49505 - 51151 (+)
Gene ID: HRGMv2_2302_29_35
Type: CAZyme
Location: 51196 - 52551 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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