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Cluster: HRGMv2_2302_CGC76

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2302_29 HRGMv2_2302_29_5 7380 9530 + GH92
CAZyme HRGMv2_2302_29 HRGMv2_2302_29_6 9543 10409 + GH43_34
CAZyme HRGMv2_2302_29 HRGMv2_2302_29_7 10463 11725 + GH28
CAZyme HRGMv2_2302_29 HRGMv2_2302_29_8 11751 13265 + GH51_1
TF HRGMv2_2302_29 HRGMv2_2302_29_9 13474 14517 + LacI
TC HRGMv2_2302_29 HRGMv2_2302_29_10 14905 15840 + 3.A.1.1.10
TC HRGMv2_2302_29 HRGMv2_2302_29_11 15855 16721 + 3.A.1.1.29
STP HRGMv2_2302_29 HRGMv2_2302_29_12 16803 18332 + SBP_bac_1
CAZyme HRGMv2_2302_29 HRGMv2_2302_29_13 18353 20806 + GH2
NULL(UNKNOWN) HRGMv2_2302_29 HRGMv2_2302_29_14 20999 21460 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2302_29 HRGMv2_2302_29_15 21453 24044 - GH106
Gene ID: HRGMv2_2302_29_5
Type: CAZyme
Location: 7380 - 9530 (+)
Gene ID: HRGMv2_2302_29_6
Type: CAZyme
Location: 9543 - 10409 (+)
Gene ID: HRGMv2_2302_29_7
Type: CAZyme
Location: 10463 - 11725 (+)
Gene ID: HRGMv2_2302_29_8
Type: CAZyme
Location: 11751 - 13265 (+)
Gene ID: HRGMv2_2302_29_9
Type: TF
Location: 13474 - 14517 (+)
Gene ID: HRGMv2_2302_29_10
Type: TC
Location: 14905 - 15840 (+)
Gene ID: HRGMv2_2302_29_11
Type: TC
Location: 15855 - 16721 (+)
Gene ID: HRGMv2_2302_29_12
Type: STP
Location: 16803 - 18332 (+)
Gene ID: HRGMv2_2302_29_13
Type: CAZyme
Location: 18353 - 20806 (+)
Gene ID: HRGMv2_2302_29_14
Type:
Location: 20999 - 21460 (-)
Gene ID: HRGMv2_2302_29_15
Type: CAZyme
Location: 21453 - 24044 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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