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Cluster: HRGMv2_2302_CGC61

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2302_18 HRGMv2_2302_18_47 47363 49201 - 3.A.1.135.6
TC HRGMv2_2302_18 HRGMv2_2302_18_48 49198 51348 - 3.A.1.135.6
TF HRGMv2_2302_18 HRGMv2_2302_18_49 51413 51880 - MarR
CAZyme HRGMv2_2302_18 HRGMv2_2302_18_50 52126 54090 - GH51_2
TC HRGMv2_2302_18 HRGMv2_2302_18_51 54059 55456 - 9.A.40.2.1
TC HRGMv2_2302_18 HRGMv2_2302_18_52 55905 57686 + 9.B.33.1.1
TF HRGMv2_2302_18 HRGMv2_2302_18_53 57683 59044 + HTH_AraC | HTH_AraC
TC HRGMv2_2302_18 HRGMv2_2302_18_54 59233 61026 + 3.A.1.1.9
TC HRGMv2_2302_18 HRGMv2_2302_18_55 61155 62087 + 3.A.1.1.9
TC HRGMv2_2302_18 HRGMv2_2302_18_56 62102 62992 + 3.A.1.1.9
Gene ID: HRGMv2_2302_18_47
Type: TC
Location: 47363 - 49201 (-)
Gene ID: HRGMv2_2302_18_48
Type: TC
Location: 49198 - 51348 (-)
Gene ID: HRGMv2_2302_18_49
Type: TF
Location: 51413 - 51880 (-)
Gene ID: HRGMv2_2302_18_50
Type: CAZyme
Location: 52126 - 54090 (-)
Gene ID: HRGMv2_2302_18_51
Type: TC
Location: 54059 - 55456 (-)
Gene ID: HRGMv2_2302_18_52
Type: TC
Location: 55905 - 57686 (+)
Gene ID: HRGMv2_2302_18_53
Type: TF
Location: 57683 - 59044 (+)
Gene ID: HRGMv2_2302_18_54
Type: TC
Location: 59233 - 61026 (+)
Gene ID: HRGMv2_2302_18_55
Type: TC
Location: 61155 - 62087 (+)
Gene ID: HRGMv2_2302_18_56
Type: TC
Location: 62102 - 62992 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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