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Cluster: HRGMv2_2302_CGC51

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2302_13 HRGMv2_2302_13_49 69392 70360 + 3.A.1.1.10
TC HRGMv2_2302_13 HRGMv2_2302_13_50 70373 71233 + 3.A.1.1.29
STP HRGMv2_2302_13 HRGMv2_2302_13_51 71336 73009 + SBP_bac_1
NULL(UNKNOWN) HRGMv2_2302_13 HRGMv2_2302_13_52 73128 75686 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2302_13 HRGMv2_2302_13_53 75851 78073 + GH105
NULL(UNKNOWN) HRGMv2_2302_13 HRGMv2_2302_13_54 78227 78457 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2302_13 HRGMv2_2302_13_55 78612 80339 + 8.A.59.2.1
TF HRGMv2_2302_13 HRGMv2_2302_13_56 80342 81085 + Fe_dep_repress | HTH_AraC
pfam HRGMv2_2302_13 HRGMv2_2302_13_57 81378 83096 + SBP_bac_1
TC HRGMv2_2302_13 HRGMv2_2302_13_58 83213 84160 + 3.A.1.1.10
TC HRGMv2_2302_13 HRGMv2_2302_13_59 84174 85088 + 3.A.1.1.10
CAZyme HRGMv2_2302_13 HRGMv2_2302_13_60 85108 87450 + GH51_2
CAZyme HRGMv2_2302_13 HRGMv2_2302_13_61 87452 88405 + GH43_22
CAZyme HRGMv2_2302_13 HRGMv2_2302_13_62 88493 90025 + GH43_35
Gene ID: HRGMv2_2302_13_49
Type: TC
Location: 69392 - 70360 (+)
Gene ID: HRGMv2_2302_13_50
Type: TC
Location: 70373 - 71233 (+)
Gene ID: HRGMv2_2302_13_51
Type: STP
Location: 71336 - 73009 (+)
Gene ID: HRGMv2_2302_13_52
Type:
Location: 73128 - 75686 (+)
Gene ID: HRGMv2_2302_13_53
Type: CAZyme
Location: 75851 - 78073 (+)
Gene ID: HRGMv2_2302_13_54
Type:
Location: 78227 - 78457 (+)
Gene ID: HRGMv2_2302_13_55
Type: TC
Location: 78612 - 80339 (+)
Gene ID: HRGMv2_2302_13_56
Type: TF
Location: 80342 - 81085 (+)
Gene ID: HRGMv2_2302_13_57
Type: pfam
Location: 81378 - 83096 (+)
Gene ID: HRGMv2_2302_13_58
Type: TC
Location: 83213 - 84160 (+)
Gene ID: HRGMv2_2302_13_59
Type: TC
Location: 84174 - 85088 (+)
Gene ID: HRGMv2_2302_13_60
Type: CAZyme
Location: 85108 - 87450 (+)
Gene ID: HRGMv2_2302_13_61
Type: CAZyme
Location: 87452 - 88405 (+)
Gene ID: HRGMv2_2302_13_62
Type: CAZyme
Location: 88493 - 90025 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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