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Cluster: HRGMv2_2302_CGC50

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2302_13 HRGMv2_2302_13_28 37186 38868 + 1.B.52.2.1
TF HRGMv2_2302_13 HRGMv2_2302_13_29 38978 40513 - HTH_AraC
TC HRGMv2_2302_13 HRGMv2_2302_13_30 40510 42288 - 8.A.59.2.1
STP HRGMv2_2302_13 HRGMv2_2302_13_31 42601 43941 + SBP_bac_1
TC HRGMv2_2302_13 HRGMv2_2302_13_32 43907 44845 + 3.A.1.1.20
TC HRGMv2_2302_13 HRGMv2_2302_13_33 44860 45726 + 3.A.1.1.34
sulfatase HRGMv2_2302_13 HRGMv2_2302_13_34 45740 47203 + S1_64
CAZyme HRGMv2_2302_13 HRGMv2_2302_13_35 47235 49919 - GH106
TF HRGMv2_2302_13 HRGMv2_2302_13_36 49965 51551 - HTH_AraC | HTH_AraC
TC HRGMv2_2302_13 HRGMv2_2302_13_37 51544 53340 - 8.A.59.2.1
TC HRGMv2_2302_13 HRGMv2_2302_13_38 53677 54606 + 3.A.1.1.29
TC HRGMv2_2302_13 HRGMv2_2302_13_39 54621 55514 + 3.A.1.1.29
STP HRGMv2_2302_13 HRGMv2_2302_13_40 55557 57335 + SBP_bac_1
TF HRGMv2_2302_13 HRGMv2_2302_13_41 57703 58413 + LytTR
TC HRGMv2_2302_13 HRGMv2_2302_13_42 58509 60323 + 3.A.1.111.2
TC HRGMv2_2302_13 HRGMv2_2302_13_43 60316 62100 + 3.A.1.111.3
TF HRGMv2_2302_13 HRGMv2_2302_13_44 62246 63313 + LacI
CAZyme HRGMv2_2302_13 HRGMv2_2302_13_45 63428 65494 + GH42
Gene ID: HRGMv2_2302_13_28
Type: TC
Location: 37186 - 38868 (+)
Gene ID: HRGMv2_2302_13_29
Type: TF
Location: 38978 - 40513 (-)
Gene ID: HRGMv2_2302_13_30
Type: TC
Location: 40510 - 42288 (-)
Gene ID: HRGMv2_2302_13_31
Type: STP
Location: 42601 - 43941 (+)
Gene ID: HRGMv2_2302_13_32
Type: TC
Location: 43907 - 44845 (+)
Gene ID: HRGMv2_2302_13_33
Type: TC
Location: 44860 - 45726 (+)
Gene ID: HRGMv2_2302_13_34
Type: sulfatase
Location: 45740 - 47203 (+)
Gene ID: HRGMv2_2302_13_35
Type: CAZyme
Location: 47235 - 49919 (-)
Gene ID: HRGMv2_2302_13_36
Type: TF
Location: 49965 - 51551 (-)
Gene ID: HRGMv2_2302_13_37
Type: TC
Location: 51544 - 53340 (-)
Gene ID: HRGMv2_2302_13_38
Type: TC
Location: 53677 - 54606 (+)
Gene ID: HRGMv2_2302_13_39
Type: TC
Location: 54621 - 55514 (+)
Gene ID: HRGMv2_2302_13_40
Type: STP
Location: 55557 - 57335 (+)
Gene ID: HRGMv2_2302_13_41
Type: TF
Location: 57703 - 58413 (+)
Gene ID: HRGMv2_2302_13_42
Type: TC
Location: 58509 - 60323 (+)
Gene ID: HRGMv2_2302_13_43
Type: TC
Location: 60316 - 62100 (+)
Gene ID: HRGMv2_2302_13_44
Type: TF
Location: 62246 - 63313 (+)
Gene ID: HRGMv2_2302_13_45
Type: CAZyme
Location: 63428 - 65494 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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