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Cluster: HRGMv2_2302_CGC47

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2302_11 HRGMv2_2302_11_55 63109 65373 - CBM67 | GH78
CAZyme HRGMv2_2302_11 HRGMv2_2302_11_56 65378 67390 - GH35
TF HRGMv2_2302_11 HRGMv2_2302_11_57 67395 68948 - HTH_AraC
TC HRGMv2_2302_11 HRGMv2_2302_11_58 68941 70833 - 9.B.33.1.1
STP HRGMv2_2302_11 HRGMv2_2302_11_59 70923 72665 - SBP_bac_1
TC HRGMv2_2302_11 HRGMv2_2302_11_60 72751 73635 - 3.A.1.1.10
TC HRGMv2_2302_11 HRGMv2_2302_11_61 73670 74602 - 3.A.1.1.29
pfam HRGMv2_2302_11 HRGMv2_2302_11_62 75200 76243 + ABC_tran | MMR_HSR1 | RsgA_GTPase
pfam HRGMv2_2302_11 HRGMv2_2302_11_63 76248 77210 - 2-Hacid_dh | 2-Hacid_dh_C
CAZyme HRGMv2_2302_11 HRGMv2_2302_11_64 77268 79655 - GH31_15
Gene ID: HRGMv2_2302_11_55
Type: CAZyme
Location: 63109 - 65373 (-)
Gene ID: HRGMv2_2302_11_56
Type: CAZyme
Location: 65378 - 67390 (-)
Gene ID: HRGMv2_2302_11_57
Type: TF
Location: 67395 - 68948 (-)
Gene ID: HRGMv2_2302_11_58
Type: TC
Location: 68941 - 70833 (-)
Gene ID: HRGMv2_2302_11_59
Type: STP
Location: 70923 - 72665 (-)
Gene ID: HRGMv2_2302_11_60
Type: TC
Location: 72751 - 73635 (-)
Gene ID: HRGMv2_2302_11_61
Type: TC
Location: 73670 - 74602 (-)
Gene ID: HRGMv2_2302_11_62
Type: pfam
Location: 75200 - 76243 (+)
Gene ID: HRGMv2_2302_11_63
Type: pfam
Location: 76248 - 77210 (-)
Gene ID: HRGMv2_2302_11_64
Type: CAZyme
Location: 77268 - 79655 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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