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Cluster: HRGMv2_2302_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2302_10 HRGMv2_2302_10_12 9436 11793 - GH31_3
TF HRGMv2_2302_10 HRGMv2_2302_10_13 11818 13356 - HTH_AraC | HTH_AraC
TC HRGMv2_2302_10 HRGMv2_2302_10_14 13388 15187 - 8.A.59.2.1
TC HRGMv2_2302_10 HRGMv2_2302_10_15 15184 16026 - 3.A.1.1.28
TC HRGMv2_2302_10 HRGMv2_2302_10_16 16028 16927 - 3.A.1.1.28
STP HRGMv2_2302_10 HRGMv2_2302_10_17 17029 18363 - SBP_bac_1
CAZyme HRGMv2_2302_10 HRGMv2_2302_10_18 18665 20410 + CBM34 | GH13_20
STP HRGMv2_2302_10 HRGMv2_2302_10_19 20511 21617 - Fer4
TC HRGMv2_2302_10 HRGMv2_2302_10_20 21636 22430 - 2.A.5.5.2
Gene ID: HRGMv2_2302_10_12
Type: CAZyme
Location: 9436 - 11793 (-)
Gene ID: HRGMv2_2302_10_13
Type: TF
Location: 11818 - 13356 (-)
Gene ID: HRGMv2_2302_10_14
Type: TC
Location: 13388 - 15187 (-)
Gene ID: HRGMv2_2302_10_15
Type: TC
Location: 15184 - 16026 (-)
Gene ID: HRGMv2_2302_10_16
Type: TC
Location: 16028 - 16927 (-)
Gene ID: HRGMv2_2302_10_17
Type: STP
Location: 17029 - 18363 (-)
Gene ID: HRGMv2_2302_10_18
Type: CAZyme
Location: 18665 - 20410 (+)
Gene ID: HRGMv2_2302_10_19
Type: STP
Location: 20511 - 21617 (-)
Gene ID: HRGMv2_2302_10_20
Type: TC
Location: 21636 - 22430 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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