dbCAN Logo

Cluster: HRGMv2_2302_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2302_5 HRGMv2_2302_5_45 46184 47932 + 8.A.59.2.1
TF HRGMv2_2302_5 HRGMv2_2302_5_46 47925 49109 + HTH_AraC | HTH_AraC
STP HRGMv2_2302_5 HRGMv2_2302_5_47 49213 50841 + SBP_bac_1
TC HRGMv2_2302_5 HRGMv2_2302_5_48 50880 51791 + 3.A.1.1.9
TC HRGMv2_2302_5 HRGMv2_2302_5_49 51807 52679 + 3.A.1.1.9
peptidase HRGMv2_2302_5 HRGMv2_2302_5_50 52696 53727 + S09.UPW
CAZyme HRGMv2_2302_5 HRGMv2_2302_5_51 53752 56457 + GH106
NULL(UNKNOWN) HRGMv2_2302_5 HRGMv2_2302_5_52 56875 57822 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2302_5 HRGMv2_2302_5_53 57950 59482 - 3.A.1.120.6
NULL(UNKNOWN) HRGMv2_2302_5 HRGMv2_2302_5_54 59968 60564 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2302_5 HRGMv2_2302_5_55 60588 61313 - 9.B.120.1.3
Gene ID: HRGMv2_2302_5_45
Type: TC
Location: 46184 - 47932 (+)
Gene ID: HRGMv2_2302_5_46
Type: TF
Location: 47925 - 49109 (+)
Gene ID: HRGMv2_2302_5_47
Type: STP
Location: 49213 - 50841 (+)
Gene ID: HRGMv2_2302_5_48
Type: TC
Location: 50880 - 51791 (+)
Gene ID: HRGMv2_2302_5_49
Type: TC
Location: 51807 - 52679 (+)
Gene ID: HRGMv2_2302_5_50
Type: peptidase
Location: 52696 - 53727 (+)
Gene ID: HRGMv2_2302_5_51
Type: CAZyme
Location: 53752 - 56457 (+)
Gene ID: HRGMv2_2302_5_52
Type:
Location: 56875 - 57822 (+)
Gene ID: HRGMv2_2302_5_53
Type: TC
Location: 57950 - 59482 (-)
Gene ID: HRGMv2_2302_5_54
Type:
Location: 59968 - 60564 (-)
Gene ID: HRGMv2_2302_5_55
Type: TC
Location: 60588 - 61313 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List