Cluster: HRGMv2_2302_CGC2
🧬 Cluster Details
- Gene Count: 24
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_2302
- CGC Family ID: CGCFAM_03690
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2302_1 | HRGMv2_2302_1_10 | 13764 | 15908 | - | 3.A.1.132.4 |
| TC | HRGMv2_2302_1 | HRGMv2_2302_1_11 | 15905 | 16933 | - | 3.A.1.132.1 |
| CAZyme | HRGMv2_2302_1 | HRGMv2_2302_1_12 | 16966 | 18516 | - | GH35 |
| CAZyme | HRGMv2_2302_1 | HRGMv2_2302_1_13 | 18531 | 20027 | - | GH39 |
| TF | HRGMv2_2302_1 | HRGMv2_2302_1_14 | 20376 | 21125 | + | HTH_AraC | HTH_AraC |
| STP | HRGMv2_2302_1 | HRGMv2_2302_1_15 | 21354 | 22751 | + | SBP_bac_1 |
| TC | HRGMv2_2302_1 | HRGMv2_2302_1_16 | 22857 | 23762 | + | 3.A.1.1.11 |
| TC | HRGMv2_2302_1 | HRGMv2_2302_1_17 | 23781 | 24641 | + | 3.A.1.1.11 |
| NULL(UNKNOWN) | HRGMv2_2302_1 | HRGMv2_2302_1_18 | 24964 | 25434 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_2302_1 | HRGMv2_2302_1_19 | 25529 | 26041 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2302_1 | HRGMv2_2302_1_20 | 26022 | 28073 | - | GH127 |
| TC | HRGMv2_2302_1 | HRGMv2_2302_1_21 | 28146 | 28979 | - | 3.A.1.1.11 |
| TC | HRGMv2_2302_1 | HRGMv2_2302_1_22 | 28976 | 29878 | - | 3.A.1.1.11 |
| STP | HRGMv2_2302_1 | HRGMv2_2302_1_23 | 29931 | 31358 | - | SBP_bac_1 |
| TC | HRGMv2_2302_1 | HRGMv2_2302_1_24 | 31529 | 33340 | - | 8.A.59.2.1 |
| TF | HRGMv2_2302_1 | HRGMv2_2302_1_25 | 33333 | 34946 | - | HTH_AraC |
| pfam | HRGMv2_2302_1 | HRGMv2_2302_1_26 | 35178 | 36797 | - | DUF3502 |
| TC | HRGMv2_2302_1 | HRGMv2_2302_1_27 | 36834 | 37733 | - | 3.A.1.1.29 |
| TC | HRGMv2_2302_1 | HRGMv2_2302_1_28 | 37807 | 38751 | - | 3.A.1.1.10 |
| TF | HRGMv2_2302_1 | HRGMv2_2302_1_29 | 38990 | 40582 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2302_1 | HRGMv2_2302_1_30 | 40601 | 42442 | + | 8.A.59.2.1 |
| CAZyme | HRGMv2_2302_1 | HRGMv2_2302_1_31 | 42861 | 44513 | + | GH63 |
| pfam | HRGMv2_2302_1 | HRGMv2_2302_1_32 | 44510 | 45544 | + | Epimerase |
| CAZyme | HRGMv2_2302_1 | HRGMv2_2302_1_33 | 45581 | 47311 | + | GH146 |
Gene ID: HRGMv2_2302_1_10
Type: TC
Location: 13764 - 15908 (-)
Type: TC
Location: 13764 - 15908 (-)
Gene ID: HRGMv2_2302_1_11
Type: TC
Location: 15905 - 16933 (-)
Type: TC
Location: 15905 - 16933 (-)
Gene ID: HRGMv2_2302_1_12
Type: CAZyme
Location: 16966 - 18516 (-)
Type: CAZyme
Location: 16966 - 18516 (-)
Gene ID: HRGMv2_2302_1_13
Type: CAZyme
Location: 18531 - 20027 (-)
Type: CAZyme
Location: 18531 - 20027 (-)
Gene ID: HRGMv2_2302_1_14
Type: TF
Location: 20376 - 21125 (+)
Type: TF
Location: 20376 - 21125 (+)
Gene ID: HRGMv2_2302_1_15
Type: STP
Location: 21354 - 22751 (+)
Type: STP
Location: 21354 - 22751 (+)
Gene ID: HRGMv2_2302_1_16
Type: TC
Location: 22857 - 23762 (+)
Type: TC
Location: 22857 - 23762 (+)
Gene ID: HRGMv2_2302_1_17
Type: TC
Location: 23781 - 24641 (+)
Type: TC
Location: 23781 - 24641 (+)
Gene ID: HRGMv2_2302_1_18
Type:
Location: 24964 - 25434 (+)
Type:
Location: 24964 - 25434 (+)
Gene ID: HRGMv2_2302_1_19
Type:
Location: 25529 - 26041 (-)
Type:
Location: 25529 - 26041 (-)
Gene ID: HRGMv2_2302_1_20
Type: CAZyme
Location: 26022 - 28073 (-)
Type: CAZyme
Location: 26022 - 28073 (-)
Gene ID: HRGMv2_2302_1_21
Type: TC
Location: 28146 - 28979 (-)
Type: TC
Location: 28146 - 28979 (-)
Gene ID: HRGMv2_2302_1_22
Type: TC
Location: 28976 - 29878 (-)
Type: TC
Location: 28976 - 29878 (-)
Gene ID: HRGMv2_2302_1_23
Type: STP
Location: 29931 - 31358 (-)
Type: STP
Location: 29931 - 31358 (-)
Gene ID: HRGMv2_2302_1_24
Type: TC
Location: 31529 - 33340 (-)
Type: TC
Location: 31529 - 33340 (-)
Gene ID: HRGMv2_2302_1_25
Type: TF
Location: 33333 - 34946 (-)
Type: TF
Location: 33333 - 34946 (-)
Gene ID: HRGMv2_2302_1_26
Type: pfam
Location: 35178 - 36797 (-)
Type: pfam
Location: 35178 - 36797 (-)
Gene ID: HRGMv2_2302_1_27
Type: TC
Location: 36834 - 37733 (-)
Type: TC
Location: 36834 - 37733 (-)
Gene ID: HRGMv2_2302_1_28
Type: TC
Location: 37807 - 38751 (-)
Type: TC
Location: 37807 - 38751 (-)
Gene ID: HRGMv2_2302_1_29
Type: TF
Location: 38990 - 40582 (+)
Type: TF
Location: 38990 - 40582 (+)
Gene ID: HRGMv2_2302_1_30
Type: TC
Location: 40601 - 42442 (+)
Type: TC
Location: 40601 - 42442 (+)
Gene ID: HRGMv2_2302_1_31
Type: CAZyme
Location: 42861 - 44513 (+)
Type: CAZyme
Location: 42861 - 44513 (+)
Gene ID: HRGMv2_2302_1_32
Type: pfam
Location: 44510 - 45544 (+)
Type: pfam
Location: 44510 - 45544 (+)
Gene ID: HRGMv2_2302_1_33
Type: CAZyme
Location: 45581 - 47311 (+)
Type: CAZyme
Location: 45581 - 47311 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Eisenbergiella
Species
Eisenbergiella sp003478085
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.