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Cluster: HRGMv2_2302_CGC143

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2302_95 HRGMv2_2302_95_7 6728 9187 + GH95
TF HRGMv2_2302_95 HRGMv2_2302_95_8 9325 11640 + HTH_AraC
TC HRGMv2_2302_95 HRGMv2_2302_95_9 11962 12939 + 3.A.1.1.10
TC HRGMv2_2302_95 HRGMv2_2302_95_10 12953 13858 + 3.A.1.1.29
pfam HRGMv2_2302_95 HRGMv2_2302_95_11 13915 15540 + SBP_bac_1 | SBP_bac_8
CAZyme HRGMv2_2302_95 HRGMv2_2302_95_12 15710 18181 + PL11 | PL11_1
NULL(UNKNOWN) HRGMv2_2302_95 HRGMv2_2302_95_13 18178 19449 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2302_95 HRGMv2_2302_95_14 19529 20743 + PL22 | PL22
Gene ID: HRGMv2_2302_95_7
Type: CAZyme
Location: 6728 - 9187 (+)
Gene ID: HRGMv2_2302_95_8
Type: TF
Location: 9325 - 11640 (+)
Gene ID: HRGMv2_2302_95_9
Type: TC
Location: 11962 - 12939 (+)
Gene ID: HRGMv2_2302_95_10
Type: TC
Location: 12953 - 13858 (+)
Gene ID: HRGMv2_2302_95_11
Type: pfam
Location: 13915 - 15540 (+)
Gene ID: HRGMv2_2302_95_12
Type: CAZyme
Location: 15710 - 18181 (+)
Gene ID: HRGMv2_2302_95_13
Type:
Location: 18178 - 19449 (+)
Gene ID: HRGMv2_2302_95_14
Type: CAZyme
Location: 19529 - 20743 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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