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Cluster: HRGMv2_2302_CGC141

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2302_90 HRGMv2_2302_90_1 153 1934 + 3.A.1.111.2
TC HRGMv2_2302_90 HRGMv2_2302_90_2 1931 3730 + 3.A.1.111.2
pfam HRGMv2_2302_90 HRGMv2_2302_90_3 3822 4826 - RF-1 | PCRF
TC HRGMv2_2302_90 HRGMv2_2302_90_4 5023 7590 - 3.A.5.1.3
TF HRGMv2_2302_90 HRGMv2_2302_90_5 7899 8924 - LacI
CAZyme HRGMv2_2302_90 HRGMv2_2302_90_6 8948 10669 - CBM34 | GH13_20
TC HRGMv2_2302_90 HRGMv2_2302_90_7 10720 11577 - 3.A.1.1.6
TC HRGMv2_2302_90 HRGMv2_2302_90_8 11574 12473 - 3.A.1.1.2
TC HRGMv2_2302_90 HRGMv2_2302_90_9 12499 13713 - 3.A.1.1.16
pfam HRGMv2_2302_90 HRGMv2_2302_90_10 13747 14961 - CBM26 | CBM26 | CBM26
NULL(UNKNOWN) HRGMv2_2302_90 HRGMv2_2302_90_11 15277 15396 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2302_90 HRGMv2_2302_90_12 15396 16157 - 8.A.3.2.2
Gene ID: HRGMv2_2302_90_1
Type: TC
Location: 153 - 1934 (+)
Gene ID: HRGMv2_2302_90_2
Type: TC
Location: 1931 - 3730 (+)
Gene ID: HRGMv2_2302_90_3
Type: pfam
Location: 3822 - 4826 (-)
Gene ID: HRGMv2_2302_90_4
Type: TC
Location: 5023 - 7590 (-)
Gene ID: HRGMv2_2302_90_5
Type: TF
Location: 7899 - 8924 (-)
Gene ID: HRGMv2_2302_90_6
Type: CAZyme
Location: 8948 - 10669 (-)
Gene ID: HRGMv2_2302_90_7
Type: TC
Location: 10720 - 11577 (-)
Gene ID: HRGMv2_2302_90_8
Type: TC
Location: 11574 - 12473 (-)
Gene ID: HRGMv2_2302_90_9
Type: TC
Location: 12499 - 13713 (-)
Gene ID: HRGMv2_2302_90_10
Type: pfam
Location: 13747 - 14961 (-)
Gene ID: HRGMv2_2302_90_11
Type:
Location: 15277 - 15396 (-)
Gene ID: HRGMv2_2302_90_12
Type: TC
Location: 15396 - 16157 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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