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Cluster: HRGMv2_2302_CGC127

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2302_75 HRGMv2_2302_75_4 5663 6589 - GT2
pfam HRGMv2_2302_75 HRGMv2_2302_75_5 6749 8008 - LytR_cpsA_psr
TC HRGMv2_2302_75 HRGMv2_2302_75_6 8058 9488 - 9.B.18.1.1
CAZyme HRGMv2_2302_75 HRGMv2_2302_75_7 9649 10647 - GT2
CAZyme HRGMv2_2302_75 HRGMv2_2302_75_8 10614 11945 - GT2
pfam HRGMv2_2302_75 HRGMv2_2302_75_9 12259 13986 - PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
CAZyme HRGMv2_2302_75 HRGMv2_2302_75_10 14117 16132 - GT2 | GT2
CAZyme HRGMv2_2302_75 HRGMv2_2302_75_11 16159 18183 - GT2
pfam HRGMv2_2302_75 HRGMv2_2302_75_12 18180 20411 - MTS | Methyltransf_11 | Methyltransf_25 | Methyltransf_31
TC HRGMv2_2302_75 HRGMv2_2302_75_13 20383 21753 - 3.A.1.103.6
TC HRGMv2_2302_75 HRGMv2_2302_75_14 21788 22813 - 3.A.1.104.1
Gene ID: HRGMv2_2302_75_4
Type: CAZyme
Location: 5663 - 6589 (-)
Gene ID: HRGMv2_2302_75_5
Type: pfam
Location: 6749 - 8008 (-)
Gene ID: HRGMv2_2302_75_6
Type: TC
Location: 8058 - 9488 (-)
Gene ID: HRGMv2_2302_75_7
Type: CAZyme
Location: 9649 - 10647 (-)
Gene ID: HRGMv2_2302_75_8
Type: CAZyme
Location: 10614 - 11945 (-)
Gene ID: HRGMv2_2302_75_9
Type: pfam
Location: 12259 - 13986 (-)
Gene ID: HRGMv2_2302_75_10
Type: CAZyme
Location: 14117 - 16132 (-)
Gene ID: HRGMv2_2302_75_11
Type: CAZyme
Location: 16159 - 18183 (-)
Gene ID: HRGMv2_2302_75_12
Type: pfam
Location: 18180 - 20411 (-)
Gene ID: HRGMv2_2302_75_13
Type: TC
Location: 20383 - 21753 (-)
Gene ID: HRGMv2_2302_75_14
Type: TC
Location: 21788 - 22813 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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