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Cluster: HRGMv2_2302_CGC126

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2302_74 HRGMv2_2302_74_13 12901 14634 - 8.A.59.2.1
TF HRGMv2_2302_74 HRGMv2_2302_74_14 14631 16229 - HTH_AraC | HTH_AraC
TC HRGMv2_2302_74 HRGMv2_2302_74_15 16504 17406 + 3.A.1.1.29
TC HRGMv2_2302_74 HRGMv2_2302_74_16 17513 18445 + 3.A.1.1.29
CAZyme HRGMv2_2302_74 HRGMv2_2302_74_17 18515 19810 + GH4
TC HRGMv2_2302_74 HRGMv2_2302_74_18 19832 21469 + 3.A.1.1.29
NULL(UNKNOWN) HRGMv2_2302_74 HRGMv2_2302_74_19 21543 21662 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_2302_74 HRGMv2_2302_74_20 21702 22535 - HTH_AraC
CAZyme HRGMv2_2302_74 HRGMv2_2302_74_21 22740 24566 + CE12
CAZyme HRGMv2_2302_74 HRGMv2_2302_74_22 24615 26924 + GH2
CAZyme HRGMv2_2302_74 HRGMv2_2302_74_23 27000 28544 + GH28
Gene ID: HRGMv2_2302_74_13
Type: TC
Location: 12901 - 14634 (-)
Gene ID: HRGMv2_2302_74_14
Type: TF
Location: 14631 - 16229 (-)
Gene ID: HRGMv2_2302_74_15
Type: TC
Location: 16504 - 17406 (+)
Gene ID: HRGMv2_2302_74_16
Type: TC
Location: 17513 - 18445 (+)
Gene ID: HRGMv2_2302_74_17
Type: CAZyme
Location: 18515 - 19810 (+)
Gene ID: HRGMv2_2302_74_18
Type: TC
Location: 19832 - 21469 (+)
Gene ID: HRGMv2_2302_74_19
Type:
Location: 21543 - 21662 (-)
Gene ID: HRGMv2_2302_74_20
Type: TF
Location: 21702 - 22535 (-)
Gene ID: HRGMv2_2302_74_21
Type: CAZyme
Location: 22740 - 24566 (+)
Gene ID: HRGMv2_2302_74_22
Type: CAZyme
Location: 24615 - 26924 (+)
Gene ID: HRGMv2_2302_74_23
Type: CAZyme
Location: 27000 - 28544 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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