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Cluster: HRGMv2_2302_CGC120

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2302_65 HRGMv2_2302_65_11 11178 12071 - 3.A.1.1.10
TC HRGMv2_2302_65 HRGMv2_2302_65_12 12081 12986 - 3.A.1.1.10
TC HRGMv2_2302_65 HRGMv2_2302_65_13 12986 14599 - 3.A.1.1.10
TF HRGMv2_2302_65 HRGMv2_2302_65_14 14697 16193 - HTH_AraC | HTH_AraC
TC HRGMv2_2302_65 HRGMv2_2302_65_15 16210 17961 - 8.A.59.2.1
CAZyme HRGMv2_2302_65 HRGMv2_2302_65_16 18259 20154 - GH51_1
TC HRGMv2_2302_65 HRGMv2_2302_65_17 20308 21222 - 3.A.1.1.10
TC HRGMv2_2302_65 HRGMv2_2302_65_18 21243 22190 - 3.A.1.1.10
pfam HRGMv2_2302_65 HRGMv2_2302_65_19 22243 23991 - SBP_bac_8
TF HRGMv2_2302_65 HRGMv2_2302_65_20 24311 25063 - HTH_AraC
TC HRGMv2_2302_65 HRGMv2_2302_65_21 25065 26792 - 8.A.59.2.1
TF HRGMv2_2302_65 HRGMv2_2302_65_22 27312 27824 + HTH_11
TC HRGMv2_2302_65 HRGMv2_2302_65_23 27992 29059 + 9.A.23.1.1
TC HRGMv2_2302_65 HRGMv2_2302_65_24 29169 30869 - 1.A.33.1.4
Gene ID: HRGMv2_2302_65_11
Type: TC
Location: 11178 - 12071 (-)
Gene ID: HRGMv2_2302_65_12
Type: TC
Location: 12081 - 12986 (-)
Gene ID: HRGMv2_2302_65_13
Type: TC
Location: 12986 - 14599 (-)
Gene ID: HRGMv2_2302_65_14
Type: TF
Location: 14697 - 16193 (-)
Gene ID: HRGMv2_2302_65_15
Type: TC
Location: 16210 - 17961 (-)
Gene ID: HRGMv2_2302_65_16
Type: CAZyme
Location: 18259 - 20154 (-)
Gene ID: HRGMv2_2302_65_17
Type: TC
Location: 20308 - 21222 (-)
Gene ID: HRGMv2_2302_65_18
Type: TC
Location: 21243 - 22190 (-)
Gene ID: HRGMv2_2302_65_19
Type: pfam
Location: 22243 - 23991 (-)
Gene ID: HRGMv2_2302_65_20
Type: TF
Location: 24311 - 25063 (-)
Gene ID: HRGMv2_2302_65_21
Type: TC
Location: 25065 - 26792 (-)
Gene ID: HRGMv2_2302_65_22
Type: TF
Location: 27312 - 27824 (+)
Gene ID: HRGMv2_2302_65_23
Type: TC
Location: 27992 - 29059 (+)
Gene ID: HRGMv2_2302_65_24
Type: TC
Location: 29169 - 30869 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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