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Cluster: HRGMv2_2302_CGC118

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2302_64 HRGMv2_2302_64_1 25 2661 + 3.A.3.5.15
TF HRGMv2_2302_64 HRGMv2_2302_64_2 2902 3693 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_2302_64 HRGMv2_2302_64_3 3892 5034 + GH88
CAZyme HRGMv2_2302_64 HRGMv2_2302_64_4 5106 6245 + GH154
STP HRGMv2_2302_64 HRGMv2_2302_64_5 6376 7422 + AraC_binding | HTH_18
TC HRGMv2_2302_64 HRGMv2_2302_64_6 7781 8734 + 3.A.1.1.10
TC HRGMv2_2302_64 HRGMv2_2302_64_7 8736 9626 + 3.A.1.1.29
STP HRGMv2_2302_64 HRGMv2_2302_64_8 9667 11421 + SBP_bac_1
CAZyme HRGMv2_2302_64 HRGMv2_2302_64_9 11435 14080 + GH106
TF HRGMv2_2302_64 HRGMv2_2302_64_10 14291 15853 + HTH_AraC | HTH_AraC
TC HRGMv2_2302_64 HRGMv2_2302_64_11 15850 17679 + 9.B.33.1.1
TC HRGMv2_2302_64 HRGMv2_2302_64_12 18063 18992 + 3.A.1.1.29
TC HRGMv2_2302_64 HRGMv2_2302_64_13 19011 19928 + 3.A.1.1.29
STP HRGMv2_2302_64 HRGMv2_2302_64_14 19968 21527 + SBP_bac_1
CAZyme HRGMv2_2302_64 HRGMv2_2302_64_15 21548 23095 + GH30_1
CAZyme HRGMv2_2302_64 HRGMv2_2302_64_16 23113 24222 + GH5_44
Gene ID: HRGMv2_2302_64_1
Type: TC
Location: 25 - 2661 (+)
Gene ID: HRGMv2_2302_64_2
Type: TF
Location: 2902 - 3693 (-)
Gene ID: HRGMv2_2302_64_3
Type: CAZyme
Location: 3892 - 5034 (+)
Gene ID: HRGMv2_2302_64_4
Type: CAZyme
Location: 5106 - 6245 (+)
Gene ID: HRGMv2_2302_64_5
Type: STP
Location: 6376 - 7422 (+)
Gene ID: HRGMv2_2302_64_6
Type: TC
Location: 7781 - 8734 (+)
Gene ID: HRGMv2_2302_64_7
Type: TC
Location: 8736 - 9626 (+)
Gene ID: HRGMv2_2302_64_8
Type: STP
Location: 9667 - 11421 (+)
Gene ID: HRGMv2_2302_64_9
Type: CAZyme
Location: 11435 - 14080 (+)
Gene ID: HRGMv2_2302_64_10
Type: TF
Location: 14291 - 15853 (+)
Gene ID: HRGMv2_2302_64_11
Type: TC
Location: 15850 - 17679 (+)
Gene ID: HRGMv2_2302_64_12
Type: TC
Location: 18063 - 18992 (+)
Gene ID: HRGMv2_2302_64_13
Type: TC
Location: 19011 - 19928 (+)
Gene ID: HRGMv2_2302_64_14
Type: STP
Location: 19968 - 21527 (+)
Gene ID: HRGMv2_2302_64_15
Type: CAZyme
Location: 21548 - 23095 (+)
Gene ID: HRGMv2_2302_64_16
Type: CAZyme
Location: 23113 - 24222 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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