Cluster: HRGMv2_2290_CGC7
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2290
- CGC Family ID: CGCFAM_06090
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2290_5 | HRGMv2_2290_5_3 | 2868 | 4487 | - | 2.A.50.2.1 |
| NULL(UNKNOWN) | HRGMv2_2290_5 | HRGMv2_2290_5_4 | 4985 | 7126 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_2290_5 | HRGMv2_2290_5_5 | 7347 | 9638 | + | HTH_AraC |
| TC | HRGMv2_2290_5 | HRGMv2_2290_5_6 | 9900 | 10835 | + | 3.A.1.1.10 |
| TC | HRGMv2_2290_5 | HRGMv2_2290_5_7 | 10870 | 11769 | + | 3.A.1.1.29 |
| STP | HRGMv2_2290_5 | HRGMv2_2290_5_8 | 11945 | 13609 | + | SBP_bac_1 |
| CAZyme | HRGMv2_2290_5 | HRGMv2_2290_5_9 | 14147 | 17296 | + | GH3 |
| NULL(UNKNOWN) | HRGMv2_2290_5 | HRGMv2_2290_5_10 | 17296 | 17775 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2290_5 | HRGMv2_2290_5_11 | 18444 | 21014 | + | GH3 |
| CAZyme | HRGMv2_2290_5 | HRGMv2_2290_5_12 | 21039 | 23534 | + | GH2 |
| CAZyme | HRGMv2_2290_5 | HRGMv2_2290_5_13 | 23574 | 26150 | + | CBM67 | GH78 |
Gene ID: HRGMv2_2290_5_3
Type: TC
Location: 2868 - 4487 (-)
Type: TC
Location: 2868 - 4487 (-)
Gene ID: HRGMv2_2290_5_4
Type:
Location: 4985 - 7126 (-)
Type:
Location: 4985 - 7126 (-)
Gene ID: HRGMv2_2290_5_5
Type: TF
Location: 7347 - 9638 (+)
Type: TF
Location: 7347 - 9638 (+)
Gene ID: HRGMv2_2290_5_6
Type: TC
Location: 9900 - 10835 (+)
Type: TC
Location: 9900 - 10835 (+)
Gene ID: HRGMv2_2290_5_7
Type: TC
Location: 10870 - 11769 (+)
Type: TC
Location: 10870 - 11769 (+)
Gene ID: HRGMv2_2290_5_8
Type: STP
Location: 11945 - 13609 (+)
Type: STP
Location: 11945 - 13609 (+)
Gene ID: HRGMv2_2290_5_9
Type: CAZyme
Location: 14147 - 17296 (+)
Type: CAZyme
Location: 14147 - 17296 (+)
Gene ID: HRGMv2_2290_5_10
Type:
Location: 17296 - 17775 (+)
Type:
Location: 17296 - 17775 (+)
Gene ID: HRGMv2_2290_5_11
Type: CAZyme
Location: 18444 - 21014 (+)
Type: CAZyme
Location: 18444 - 21014 (+)
Gene ID: HRGMv2_2290_5_12
Type: CAZyme
Location: 21039 - 23534 (+)
Type: CAZyme
Location: 21039 - 23534 (+)
Gene ID: HRGMv2_2290_5_13
Type: CAZyme
Location: 23574 - 26150 (+)
Type: CAZyme
Location: 23574 - 26150 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.