Cluster: HRGMv2_2290_CGC56
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2290
- CGC Family ID: CGCFAM_10022
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2290_125 | HRGMv2_2290_125_2 | 3787 | 4782 | + | 9.B.18.2.1 |
| CAZyme | HRGMv2_2290_125 | HRGMv2_2290_125_3 | 5007 | 5732 | + | GT2 |
| pfam | HRGMv2_2290_125 | HRGMv2_2290_125_4 | 5773 | 6909 | + | FAD_binding_2 | DAO | NAD_binding_8 |
| pfam | HRGMv2_2290_125 | HRGMv2_2290_125_5 | 6906 | 8726 | + | Glucos_trans_II |
| CAZyme | HRGMv2_2290_125 | HRGMv2_2290_125_6 | 8758 | 9699 | + | GT2 |
Gene ID: HRGMv2_2290_125_2
Type: TC
Location: 3787 - 4782 (+)
Type: TC
Location: 3787 - 4782 (+)
Gene ID: HRGMv2_2290_125_3
Type: CAZyme
Location: 5007 - 5732 (+)
Type: CAZyme
Location: 5007 - 5732 (+)
Gene ID: HRGMv2_2290_125_4
Type: pfam
Location: 5773 - 6909 (+)
Type: pfam
Location: 5773 - 6909 (+)
Gene ID: HRGMv2_2290_125_5
Type: pfam
Location: 6906 - 8726 (+)
Type: pfam
Location: 6906 - 8726 (+)
Gene ID: HRGMv2_2290_125_6
Type: CAZyme
Location: 8758 - 9699 (+)
Type: CAZyme
Location: 8758 - 9699 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2290_125_2 | vegetarian > omnivore | 1.59364 | 0.03673 |
| HRGMv2_2290_125_2 | vegetarian > vegan | 1.01538 | 0.00855 |