Cluster: HRGMv2_2290_CGC55
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2290
- CGC Family ID: CGCFAM_10021
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2290_124 | HRGMv2_2290_124_2 | 2790 | 5366 | + | 9.B.144.1.5 |
| NULL(UNKNOWN) | HRGMv2_2290_124 | HRGMv2_2290_124_3 | 5305 | 5454 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2290_124 | HRGMv2_2290_124_4 | 5447 | 6322 | + | 2-oxoacid_dh |
| TC | HRGMv2_2290_124 | HRGMv2_2290_124_5 | 6319 | 8061 | + | 4.C.1.1.4 |
| CAZyme | HRGMv2_2290_124 | HRGMv2_2290_124_6 | 8363 | 9709 | - | GH27 |
Gene ID: HRGMv2_2290_124_2
Type: TC
Location: 2790 - 5366 (+)
Type: TC
Location: 2790 - 5366 (+)
Gene ID: HRGMv2_2290_124_3
Type:
Location: 5305 - 5454 (+)
Type:
Location: 5305 - 5454 (+)
Gene ID: HRGMv2_2290_124_4
Type: pfam
Location: 5447 - 6322 (+)
Type: pfam
Location: 5447 - 6322 (+)
Gene ID: HRGMv2_2290_124_5
Type: TC
Location: 6319 - 8061 (+)
Type: TC
Location: 6319 - 8061 (+)
Gene ID: HRGMv2_2290_124_6
Type: CAZyme
Location: 8363 - 9709 (-)
Type: CAZyme
Location: 8363 - 9709 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2290_124_5 | vegetarian > vegan | 1.39543 | 0.00855 |