Cluster: HRGMv2_2290_CGC34
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2290
- CGC Family ID: CGCFAM_00477
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2290_45 | HRGMv2_2290_45_7 | 6591 | 7952 | + | 2.A.66.1.33 |
| CAZyme | HRGMv2_2290_45 | HRGMv2_2290_45_8 | 7999 | 10839 | - | GH3 |
| pfam | HRGMv2_2290_45 | HRGMv2_2290_45_9 | 10958 | 12034 | - | cobW |
| CAZyme | HRGMv2_2290_45 | HRGMv2_2290_45_10 | 12143 | 13171 | - | GH172 |
Gene ID: HRGMv2_2290_45_7
Type: TC
Location: 6591 - 7952 (+)
Type: TC
Location: 6591 - 7952 (+)
Gene ID: HRGMv2_2290_45_8
Type: CAZyme
Location: 7999 - 10839 (-)
Type: CAZyme
Location: 7999 - 10839 (-)
Gene ID: HRGMv2_2290_45_9
Type: pfam
Location: 10958 - 12034 (-)
Type: pfam
Location: 10958 - 12034 (-)
Gene ID: HRGMv2_2290_45_10
Type: CAZyme
Location: 12143 - 13171 (-)
Type: CAZyme
Location: 12143 - 13171 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2290_45_10 | vegetarian > vegan | 1.67839 | 0.00855 |