Cluster: HRGMv2_2290_CGC3
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_2290
- CGC Family ID: CGCFAM_10020
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2290_2 | HRGMv2_2290_2_27 | 34540 | 36819 | - | GH35 |
| CAZyme | HRGMv2_2290_2 | HRGMv2_2290_2_28 | 36816 | 37607 | - | CE1 |
| CAZyme | HRGMv2_2290_2 | HRGMv2_2290_2_29 | 37607 | 38398 | - | CE1 |
| STP | HRGMv2_2290_2 | HRGMv2_2290_2_30 | 38447 | 40060 | - | SBP_bac_1 |
| pfam | HRGMv2_2290_2 | HRGMv2_2290_2_31 | 40130 | 40915 | - | Lactamase_B |
| TC | HRGMv2_2290_2 | HRGMv2_2290_2_32 | 40930 | 41847 | - | 3.A.1.1.29 |
| TC | HRGMv2_2290_2 | HRGMv2_2290_2_33 | 41859 | 42797 | - | 3.A.1.1.10 |
| pfam | HRGMv2_2290_2 | HRGMv2_2290_2_34 | 43059 | 44222 | + | HTH_30 |
| peptidase | HRGMv2_2290_2 | HRGMv2_2290_2_35 | 44224 | 45813 | - | S09.UNW |
| TC | HRGMv2_2290_2 | HRGMv2_2290_2_36 | 45876 | 47264 | - | 2.A.66.1.12 |
| CAZyme | HRGMv2_2290_2 | HRGMv2_2290_2_37 | 47261 | 49636 | - | GH2 |
| CAZyme | HRGMv2_2290_2 | HRGMv2_2290_2_38 | 49614 | 51938 | - | CE1 | CE1 |
| TC | HRGMv2_2290_2 | HRGMv2_2290_2_39 | 51994 | 52917 | - | 3.A.1.1.29 |
| TC | HRGMv2_2290_2 | HRGMv2_2290_2_40 | 52930 | 53874 | - | 3.A.1.1.10 |
Gene ID: HRGMv2_2290_2_27
Type: CAZyme
Location: 34540 - 36819 (-)
Type: CAZyme
Location: 34540 - 36819 (-)
Gene ID: HRGMv2_2290_2_28
Type: CAZyme
Location: 36816 - 37607 (-)
Type: CAZyme
Location: 36816 - 37607 (-)
Gene ID: HRGMv2_2290_2_29
Type: CAZyme
Location: 37607 - 38398 (-)
Type: CAZyme
Location: 37607 - 38398 (-)
Gene ID: HRGMv2_2290_2_30
Type: STP
Location: 38447 - 40060 (-)
Type: STP
Location: 38447 - 40060 (-)
Gene ID: HRGMv2_2290_2_31
Type: pfam
Location: 40130 - 40915 (-)
Type: pfam
Location: 40130 - 40915 (-)
Gene ID: HRGMv2_2290_2_32
Type: TC
Location: 40930 - 41847 (-)
Type: TC
Location: 40930 - 41847 (-)
Gene ID: HRGMv2_2290_2_33
Type: TC
Location: 41859 - 42797 (-)
Type: TC
Location: 41859 - 42797 (-)
Gene ID: HRGMv2_2290_2_34
Type: pfam
Location: 43059 - 44222 (+)
Type: pfam
Location: 43059 - 44222 (+)
Gene ID: HRGMv2_2290_2_35
Type: peptidase
Location: 44224 - 45813 (-)
Type: peptidase
Location: 44224 - 45813 (-)
Gene ID: HRGMv2_2290_2_36
Type: TC
Location: 45876 - 47264 (-)
Type: TC
Location: 45876 - 47264 (-)
Gene ID: HRGMv2_2290_2_37
Type: CAZyme
Location: 47261 - 49636 (-)
Type: CAZyme
Location: 47261 - 49636 (-)
Gene ID: HRGMv2_2290_2_38
Type: CAZyme
Location: 49614 - 51938 (-)
Type: CAZyme
Location: 49614 - 51938 (-)
Gene ID: HRGMv2_2290_2_39
Type: TC
Location: 51994 - 52917 (-)
Type: TC
Location: 51994 - 52917 (-)
Gene ID: HRGMv2_2290_2_40
Type: TC
Location: 52930 - 53874 (-)
Type: TC
Location: 52930 - 53874 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.