Cluster: HRGMv2_2290_CGC28
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2290
- CGC Family ID: CGCFAM_10019
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2290_31 | HRGMv2_2290_31_3 | 4334 | 6751 | - | GH78 |
| CAZyme | HRGMv2_2290_31 | HRGMv2_2290_31_4 | 6778 | 8694 | - | PL33 |
| peptidase | HRGMv2_2290_31 | HRGMv2_2290_31_5 | 8820 | 9938 | - | M24.UNB |
| TC | HRGMv2_2290_31 | HRGMv2_2290_31_6 | 10320 | 11759 | + | 9.A.11.1.1 |
| STP | HRGMv2_2290_31 | HRGMv2_2290_31_7 | 11784 | 13088 | - | Aminotran_1_2 |
| CAZyme | HRGMv2_2290_31 | HRGMv2_2290_31_8 | 13472 | 14503 | - | GH117 |
| TC | HRGMv2_2290_31 | HRGMv2_2290_31_9 | 14726 | 15667 | - | 3.A.1.1.11 |
| TC | HRGMv2_2290_31 | HRGMv2_2290_31_10 | 15758 | 16663 | - | 3.A.1.1.11 |
| STP | HRGMv2_2290_31 | HRGMv2_2290_31_11 | 16833 | 18203 | - | SBP_bac_1 |
| TC | HRGMv2_2290_31 | HRGMv2_2290_31_12 | 18570 | 20318 | + | 8.A.59.2.1 |
| TF | HRGMv2_2290_31 | HRGMv2_2290_31_13 | 20311 | 21906 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2290_31 | HRGMv2_2290_31_14 | 21981 | 24392 | - | PL30 | PL30 |
Gene ID: HRGMv2_2290_31_3
Type: CAZyme
Location: 4334 - 6751 (-)
Type: CAZyme
Location: 4334 - 6751 (-)
Gene ID: HRGMv2_2290_31_4
Type: CAZyme
Location: 6778 - 8694 (-)
Type: CAZyme
Location: 6778 - 8694 (-)
Gene ID: HRGMv2_2290_31_5
Type: peptidase
Location: 8820 - 9938 (-)
Type: peptidase
Location: 8820 - 9938 (-)
Gene ID: HRGMv2_2290_31_6
Type: TC
Location: 10320 - 11759 (+)
Type: TC
Location: 10320 - 11759 (+)
Gene ID: HRGMv2_2290_31_7
Type: STP
Location: 11784 - 13088 (-)
Type: STP
Location: 11784 - 13088 (-)
Gene ID: HRGMv2_2290_31_8
Type: CAZyme
Location: 13472 - 14503 (-)
Type: CAZyme
Location: 13472 - 14503 (-)
Gene ID: HRGMv2_2290_31_9
Type: TC
Location: 14726 - 15667 (-)
Type: TC
Location: 14726 - 15667 (-)
Gene ID: HRGMv2_2290_31_10
Type: TC
Location: 15758 - 16663 (-)
Type: TC
Location: 15758 - 16663 (-)
Gene ID: HRGMv2_2290_31_11
Type: STP
Location: 16833 - 18203 (-)
Type: STP
Location: 16833 - 18203 (-)
Gene ID: HRGMv2_2290_31_12
Type: TC
Location: 18570 - 20318 (+)
Type: TC
Location: 18570 - 20318 (+)
Gene ID: HRGMv2_2290_31_13
Type: TF
Location: 20311 - 21906 (+)
Type: TF
Location: 20311 - 21906 (+)
Gene ID: HRGMv2_2290_31_14
Type: CAZyme
Location: 21981 - 24392 (-)
Type: CAZyme
Location: 21981 - 24392 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.