Cluster: HRGMv2_2290_CGC2
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2290
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2290_2 | HRGMv2_2290_2_2 | 923 | 2845 | - | 3.A.1.106.11 |
| TC | HRGMv2_2290_2 | HRGMv2_2290_2_3 | 2845 | 4608 | - | 3.A.1.106.12 |
| STP | HRGMv2_2290_2 | HRGMv2_2290_2_4 | 4854 | 5135 | + | NTP_transf_2 |
| pfam | HRGMv2_2290_2 | HRGMv2_2290_2_5 | 5181 | 6404 | - | PFK |
| TC | HRGMv2_2290_2 | HRGMv2_2290_2_6 | 6605 | 7156 | - | 3.A.1.26.10 |
| CAZyme | HRGMv2_2290_2 | HRGMv2_2290_2_7 | 7738 | 9228 | - | GH51_1 |
| CAZyme | HRGMv2_2290_2 | HRGMv2_2290_2_8 | 9242 | 11200 | - | PL27 |
| CAZyme | HRGMv2_2290_2 | HRGMv2_2290_2_9 | 11193 | 12728 | - | GH28 |
| CAZyme | HRGMv2_2290_2 | HRGMv2_2290_2_10 | 12744 | 15137 | - | GH2 |
| NULL(UNKNOWN) | HRGMv2_2290_2 | HRGMv2_2290_2_11 | 15224 | 17032 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2290_2 | HRGMv2_2290_2_12 | 17104 | 18018 | - | 3.A.1.1.29 |
| TC | HRGMv2_2290_2 | HRGMv2_2290_2_13 | 18034 | 18945 | - | 3.A.1.1.29 |
| TF | HRGMv2_2290_2 | HRGMv2_2290_2_14 | 19165 | 20676 | - | HTH_AraC |
| TC | HRGMv2_2290_2 | HRGMv2_2290_2_15 | 20681 | 22423 | - | 8.A.59.2.1 |
Gene ID: HRGMv2_2290_2_2
Type: TC
Location: 923 - 2845 (-)
Type: TC
Location: 923 - 2845 (-)
Gene ID: HRGMv2_2290_2_3
Type: TC
Location: 2845 - 4608 (-)
Type: TC
Location: 2845 - 4608 (-)
Gene ID: HRGMv2_2290_2_4
Type: STP
Location: 4854 - 5135 (+)
Type: STP
Location: 4854 - 5135 (+)
Gene ID: HRGMv2_2290_2_5
Type: pfam
Location: 5181 - 6404 (-)
Type: pfam
Location: 5181 - 6404 (-)
Gene ID: HRGMv2_2290_2_6
Type: TC
Location: 6605 - 7156 (-)
Type: TC
Location: 6605 - 7156 (-)
Gene ID: HRGMv2_2290_2_7
Type: CAZyme
Location: 7738 - 9228 (-)
Type: CAZyme
Location: 7738 - 9228 (-)
Gene ID: HRGMv2_2290_2_8
Type: CAZyme
Location: 9242 - 11200 (-)
Type: CAZyme
Location: 9242 - 11200 (-)
Gene ID: HRGMv2_2290_2_9
Type: CAZyme
Location: 11193 - 12728 (-)
Type: CAZyme
Location: 11193 - 12728 (-)
Gene ID: HRGMv2_2290_2_10
Type: CAZyme
Location: 12744 - 15137 (-)
Type: CAZyme
Location: 12744 - 15137 (-)
Gene ID: HRGMv2_2290_2_11
Type:
Location: 15224 - 17032 (-)
Type:
Location: 15224 - 17032 (-)
Gene ID: HRGMv2_2290_2_12
Type: TC
Location: 17104 - 18018 (-)
Type: TC
Location: 17104 - 18018 (-)
Gene ID: HRGMv2_2290_2_13
Type: TC
Location: 18034 - 18945 (-)
Type: TC
Location: 18034 - 18945 (-)
Gene ID: HRGMv2_2290_2_14
Type: TF
Location: 19165 - 20676 (-)
Type: TF
Location: 19165 - 20676 (-)
Gene ID: HRGMv2_2290_2_15
Type: TC
Location: 20681 - 22423 (-)
Type: TC
Location: 20681 - 22423 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.