Cluster: HRGMv2_2290_CGC18
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2290
- CGC Family ID: CGCFAM_04981
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2290_16 | HRGMv2_2290_16_2 | 695 | 5590 | - | CBM66 | GH123 |
| TC | HRGMv2_2290_16 | HRGMv2_2290_16_3 | 5710 | 6594 | - | 3.A.1.1.9 |
| TC | HRGMv2_2290_16 | HRGMv2_2290_16_4 | 6695 | 7636 | - | 3.A.1.1.9 |
| TC | HRGMv2_2290_16 | HRGMv2_2290_16_5 | 7845 | 9632 | - | 3.A.1.1.9 |
| TF | HRGMv2_2290_16 | HRGMv2_2290_16_6 | 9776 | 11395 | - | HTH_AraC |
| TC | HRGMv2_2290_16 | HRGMv2_2290_16_7 | 11554 | 13290 | - | 9.B.33.1.1 |
| TC | HRGMv2_2290_16 | HRGMv2_2290_16_8 | 13574 | 14602 | - | 9.A.11.1.1 |
Gene ID: HRGMv2_2290_16_2
Type: CAZyme
Location: 695 - 5590 (-)
Type: CAZyme
Location: 695 - 5590 (-)
Gene ID: HRGMv2_2290_16_3
Type: TC
Location: 5710 - 6594 (-)
Type: TC
Location: 5710 - 6594 (-)
Gene ID: HRGMv2_2290_16_4
Type: TC
Location: 6695 - 7636 (-)
Type: TC
Location: 6695 - 7636 (-)
Gene ID: HRGMv2_2290_16_5
Type: TC
Location: 7845 - 9632 (-)
Type: TC
Location: 7845 - 9632 (-)
Gene ID: HRGMv2_2290_16_6
Type: TF
Location: 9776 - 11395 (-)
Type: TF
Location: 9776 - 11395 (-)
Gene ID: HRGMv2_2290_16_7
Type: TC
Location: 11554 - 13290 (-)
Type: TC
Location: 11554 - 13290 (-)
Gene ID: HRGMv2_2290_16_8
Type: TC
Location: 13574 - 14602 (-)
Type: TC
Location: 13574 - 14602 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.