Cluster: HRGMv2_2290_CGC17
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 10
- Substrate:
- Genome ID: HRGMv2_2290
- CGC Family ID: CGCFAM_00003
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2290_15 | HRGMv2_2290_15_4 | 2827 | 3597 | + | GT2 |
| TC | HRGMv2_2290_15 | HRGMv2_2290_15_5 | 4033 | 5484 | + | 9.B.18.1.3 |
| NULL(UNKNOWN) | HRGMv2_2290_15 | HRGMv2_2290_15_6 | 5487 | 6527 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2290_15 | HRGMv2_2290_15_7 | 6646 | 7449 | + | GT2 |
| pfam | HRGMv2_2290_15 | HRGMv2_2290_15_8 | 7586 | 8707 | + | EpsG |
| CAZyme | HRGMv2_2290_15 | HRGMv2_2290_15_9 | 8765 | 9589 | + | GT2 |
| CAZyme | HRGMv2_2290_15 | HRGMv2_2290_15_10 | 9586 | 11037 | + | GT4 |
| CAZyme | HRGMv2_2290_15 | HRGMv2_2290_15_11 | 11049 | 12323 | + | GT4 |
| CAZyme | HRGMv2_2290_15 | HRGMv2_2290_15_12 | 12483 | 13499 | + | GT2 |
| pfam | HRGMv2_2290_15 | HRGMv2_2290_15_13 | 13540 | 15369 | + | DUF6044 |
| TC | HRGMv2_2290_15 | HRGMv2_2290_15_14 | 15532 | 17424 | + | 9.B.18.2.1 |
| TC | HRGMv2_2290_15 | HRGMv2_2290_15_15 | 17528 | 18136 | + | 9.B.18.1.3 |
| pfam | HRGMv2_2290_15 | HRGMv2_2290_15_16 | 18154 | 19056 | + | 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4 |
| CAZyme | HRGMv2_2290_15 | HRGMv2_2290_15_17 | 19247 | 20005 | + | GT2 |
| CAZyme | HRGMv2_2290_15 | HRGMv2_2290_15_18 | 20087 | 21325 | + | GT4 |
| CAZyme | HRGMv2_2290_15 | HRGMv2_2290_15_19 | 21362 | 22456 | + | GT2 |
| CAZyme | HRGMv2_2290_15 | HRGMv2_2290_15_20 | 22776 | 25001 | + | GH73 |
Gene ID: HRGMv2_2290_15_4
Type: CAZyme
Location: 2827 - 3597 (+)
Type: CAZyme
Location: 2827 - 3597 (+)
Gene ID: HRGMv2_2290_15_5
Type: TC
Location: 4033 - 5484 (+)
Type: TC
Location: 4033 - 5484 (+)
Gene ID: HRGMv2_2290_15_6
Type:
Location: 5487 - 6527 (+)
Type:
Location: 5487 - 6527 (+)
Gene ID: HRGMv2_2290_15_7
Type: CAZyme
Location: 6646 - 7449 (+)
Type: CAZyme
Location: 6646 - 7449 (+)
Gene ID: HRGMv2_2290_15_8
Type: pfam
Location: 7586 - 8707 (+)
Type: pfam
Location: 7586 - 8707 (+)
Gene ID: HRGMv2_2290_15_9
Type: CAZyme
Location: 8765 - 9589 (+)
Type: CAZyme
Location: 8765 - 9589 (+)
Gene ID: HRGMv2_2290_15_10
Type: CAZyme
Location: 9586 - 11037 (+)
Type: CAZyme
Location: 9586 - 11037 (+)
Gene ID: HRGMv2_2290_15_11
Type: CAZyme
Location: 11049 - 12323 (+)
Type: CAZyme
Location: 11049 - 12323 (+)
Gene ID: HRGMv2_2290_15_12
Type: CAZyme
Location: 12483 - 13499 (+)
Type: CAZyme
Location: 12483 - 13499 (+)
Gene ID: HRGMv2_2290_15_13
Type: pfam
Location: 13540 - 15369 (+)
Type: pfam
Location: 13540 - 15369 (+)
Gene ID: HRGMv2_2290_15_14
Type: TC
Location: 15532 - 17424 (+)
Type: TC
Location: 15532 - 17424 (+)
Gene ID: HRGMv2_2290_15_15
Type: TC
Location: 17528 - 18136 (+)
Type: TC
Location: 17528 - 18136 (+)
Gene ID: HRGMv2_2290_15_16
Type: pfam
Location: 18154 - 19056 (+)
Type: pfam
Location: 18154 - 19056 (+)
Gene ID: HRGMv2_2290_15_17
Type: CAZyme
Location: 19247 - 20005 (+)
Type: CAZyme
Location: 19247 - 20005 (+)
Gene ID: HRGMv2_2290_15_18
Type: CAZyme
Location: 20087 - 21325 (+)
Type: CAZyme
Location: 20087 - 21325 (+)
Gene ID: HRGMv2_2290_15_19
Type: CAZyme
Location: 21362 - 22456 (+)
Type: CAZyme
Location: 21362 - 22456 (+)
Gene ID: HRGMv2_2290_15_20
Type: CAZyme
Location: 22776 - 25001 (+)
Type: CAZyme
Location: 22776 - 25001 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.