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Cluster: HRGMv2_2290_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2290_13 HRGMv2_2290_13_16 16932 18341 + 2.A.66.1.33
CAZyme HRGMv2_2290_13 HRGMv2_2290_13_17 18649 19779 + GT2
NULL(UNKNOWN) HRGMv2_2290_13 HRGMv2_2290_13_18 19845 20426 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2290_13 HRGMv2_2290_13_19 20607 21737 + 4.D.2.1.5
TC HRGMv2_2290_13 HRGMv2_2290_13_20 21661 23457 - 8.A.59.2.1
TF HRGMv2_2290_13 HRGMv2_2290_13_21 23454 24989 - HTH_AraC | HTH_AraC
TC HRGMv2_2290_13 HRGMv2_2290_13_22 25280 26230 + 3.A.1.1.29
TC HRGMv2_2290_13 HRGMv2_2290_13_23 26271 27164 + 3.A.1.1.29
CAZyme HRGMv2_2290_13 HRGMv2_2290_13_24 27182 28483 + GH4
STP HRGMv2_2290_13 HRGMv2_2290_13_25 28501 30075 + SBP_bac_1
CAZyme HRGMv2_2290_13 HRGMv2_2290_13_26 30421 32625 + GH36
Gene ID: HRGMv2_2290_13_16
Type: TC
Location: 16932 - 18341 (+)
Gene ID: HRGMv2_2290_13_17
Type: CAZyme
Location: 18649 - 19779 (+)
Gene ID: HRGMv2_2290_13_18
Type:
Location: 19845 - 20426 (+)
Gene ID: HRGMv2_2290_13_19
Type: TC
Location: 20607 - 21737 (+)
Gene ID: HRGMv2_2290_13_20
Type: TC
Location: 21661 - 23457 (-)
Gene ID: HRGMv2_2290_13_21
Type: TF
Location: 23454 - 24989 (-)
Gene ID: HRGMv2_2290_13_22
Type: TC
Location: 25280 - 26230 (+)
Gene ID: HRGMv2_2290_13_23
Type: TC
Location: 26271 - 27164 (+)
Gene ID: HRGMv2_2290_13_24
Type: CAZyme
Location: 27182 - 28483 (+)
Gene ID: HRGMv2_2290_13_25
Type: STP
Location: 28501 - 30075 (+)
Gene ID: HRGMv2_2290_13_26
Type: CAZyme
Location: 30421 - 32625 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Acetatifactor
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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