Cluster: HRGMv2_2290_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2290
- CGC Family ID: CGCFAM_02676
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2290_13 | HRGMv2_2290_13_4 | 3818 | 5050 | + | 2.A.45.2.6 |
| pfam | HRGMv2_2290_13 | HRGMv2_2290_13_5 | 5303 | 5896 | + | DUF436 |
| CAZyme | HRGMv2_2290_13 | HRGMv2_2290_13_6 | 6013 | 7092 | - | GT28 |
| pfam | HRGMv2_2290_13 | HRGMv2_2290_13_7 | 7242 | 7490 | - | TSCPD |
| CAZyme | HRGMv2_2290_13 | HRGMv2_2290_13_8 | 8117 | 9490 | + | GH4 |
Gene ID: HRGMv2_2290_13_4
Type: TC
Location: 3818 - 5050 (+)
Type: TC
Location: 3818 - 5050 (+)
Gene ID: HRGMv2_2290_13_5
Type: pfam
Location: 5303 - 5896 (+)
Type: pfam
Location: 5303 - 5896 (+)
Gene ID: HRGMv2_2290_13_6
Type: CAZyme
Location: 6013 - 7092 (-)
Type: CAZyme
Location: 6013 - 7092 (-)
Gene ID: HRGMv2_2290_13_7
Type: pfam
Location: 7242 - 7490 (-)
Type: pfam
Location: 7242 - 7490 (-)
Gene ID: HRGMv2_2290_13_8
Type: CAZyme
Location: 8117 - 9490 (+)
Type: CAZyme
Location: 8117 - 9490 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2290_13_6 | vegetarian > vegan | 1.30348 | 0.00855 |